Hb_001210_100

Information

Type -
Description -
Location Contig1210: 98149-103073
Sequence    

Annotation

kegg
ID rcu:RCOM_0896520
description Gibberellin 20 oxidase, putative (EC:1.14.11.23)
nr
ID XP_002517546.1
description Gibberellin 20 oxidase, putative [Ricinus communis]
swissprot
ID Q9ZTA3
description Probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Arabidopsis thaliana GN=AOP1 PE=2 SV=1
trembl
ID B9RUX7
description Gibberellin 20 oxidase, putative OS=Ricinus communis GN=RCOM_0896520 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable 2-oxoglutarate-dependent dioxygenase aop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001210_100 0.0 - - Gibberellin 20 oxidase, putative [Ricinus communis]
2 Hb_006916_180 0.1957272545 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
3 Hb_001534_040 0.2090551716 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
4 Hb_003935_010 0.2325000387 - - -
5 Hb_002000_120 0.2459239074 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005743_030 0.2534079033 - - hypothetical protein, partial [Pseudomonas fluorescens]
7 Hb_005436_030 0.2558468451 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
8 Hb_060822_010 0.2568257798 - - -
9 Hb_000213_090 0.2602266191 - - hypothetical protein OsI_39056 [Oryza sativa Indica Group]
10 Hb_001538_040 0.265584672 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
11 Hb_000039_200 0.2702662762 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
12 Hb_001226_190 0.2764697349 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
13 Hb_006810_010 0.2777840745 - - hypothetical protein B456_012G018200 [Gossypium raimondii]
14 Hb_024570_020 0.2805956015 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
15 Hb_000395_210 0.2849383159 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
16 Hb_023547_020 0.2862608531 - - conserved hypothetical protein [Ricinus communis]
17 Hb_021443_050 0.288189918 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000149_120 0.2919641634 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
19 Hb_000699_050 0.2976259387 - - -
20 Hb_000318_400 0.3007183145 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001210_100 Hb_001210_100 Hb_006916_180 Hb_006916_180 Hb_001210_100--Hb_006916_180 Hb_001534_040 Hb_001534_040 Hb_001210_100--Hb_001534_040 Hb_003935_010 Hb_003935_010 Hb_001210_100--Hb_003935_010 Hb_002000_120 Hb_002000_120 Hb_001210_100--Hb_002000_120 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_005436_030 Hb_005436_030 Hb_001210_100--Hb_005436_030 Hb_006916_180--Hb_002000_120 Hb_023547_020 Hb_023547_020 Hb_006916_180--Hb_023547_020 Hb_006916_180--Hb_005436_030 Hb_003645_050 Hb_003645_050 Hb_006916_180--Hb_003645_050 Hb_006916_180--Hb_001534_040 Hb_060822_010 Hb_060822_010 Hb_001534_040--Hb_060822_010 Hb_001534_040--Hb_005436_030 Hb_089299_010 Hb_089299_010 Hb_001534_040--Hb_089299_010 Hb_142051_010 Hb_142051_010 Hb_001534_040--Hb_142051_010 Hb_006810_010 Hb_006810_010 Hb_001534_040--Hb_006810_010 Hb_002809_090 Hb_002809_090 Hb_001534_040--Hb_002809_090 Hb_001226_190 Hb_001226_190 Hb_003935_010--Hb_001226_190 Hb_136092_010 Hb_136092_010 Hb_003935_010--Hb_136092_010 Hb_001596_010 Hb_001596_010 Hb_003935_010--Hb_001596_010 Hb_000340_050 Hb_000340_050 Hb_003935_010--Hb_000340_050 Hb_003935_010--Hb_006810_010 Hb_000094_050 Hb_000094_050 Hb_002000_120--Hb_000094_050 Hb_002000_120--Hb_003645_050 Hb_010691_010 Hb_010691_010 Hb_002000_120--Hb_010691_010 Hb_002217_290 Hb_002217_290 Hb_002000_120--Hb_002217_290 Hb_000318_400 Hb_000318_400 Hb_005743_030--Hb_000318_400 Hb_001005_040 Hb_001005_040 Hb_005743_030--Hb_001005_040 Hb_004864_010 Hb_004864_010 Hb_005743_030--Hb_004864_010 Hb_012023_010 Hb_012023_010 Hb_005743_030--Hb_012023_010 Hb_021443_050 Hb_021443_050 Hb_005743_030--Hb_021443_050 Hb_005743_030--Hb_001534_040 Hb_005436_030--Hb_023547_020 Hb_001538_040 Hb_001538_040 Hb_005436_030--Hb_001538_040 Hb_005436_030--Hb_060822_010 Hb_064106_010 Hb_064106_010 Hb_005436_030--Hb_064106_010 Hb_003494_180 Hb_003494_180 Hb_005436_030--Hb_003494_180 Hb_006992_030 Hb_006992_030 Hb_005436_030--Hb_006992_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0168036 0.0376702 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0302266 0 0.0967881 0.0627105

CAGE analysis