Hb_005743_030

Information

Type -
Description -
Location Contig5743: 15853-17713
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005743_030 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_000318_400 0.183004678 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001005_040 0.2018130076 - - -
4 Hb_004864_010 0.2061950971 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
5 Hb_012023_010 0.2062908785 - - conserved hypothetical protein [Ricinus communis]
6 Hb_021443_050 0.206689366 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001534_040 0.2083919887 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
8 Hb_004021_020 0.2089370528 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
9 Hb_001288_050 0.2106792536 - - -
10 Hb_001571_020 0.2124638254 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
11 Hb_002016_130 0.2134820668 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
12 Hb_000856_130 0.2142882566 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_009848_060 0.2144422383 - - unknown [Glycine max]
14 Hb_002529_070 0.217501043 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
15 Hb_001301_010 0.2178973041 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_009230_020 0.2212751685 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_000137_060 0.2217584753 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
18 Hb_000442_170 0.2230547354 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_008834_010 0.2235368248 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
20 Hb_003095_110 0.2251676006 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]

Gene co-expression network

sample Hb_005743_030 Hb_005743_030 Hb_000318_400 Hb_000318_400 Hb_005743_030--Hb_000318_400 Hb_001005_040 Hb_001005_040 Hb_005743_030--Hb_001005_040 Hb_004864_010 Hb_004864_010 Hb_005743_030--Hb_004864_010 Hb_012023_010 Hb_012023_010 Hb_005743_030--Hb_012023_010 Hb_021443_050 Hb_021443_050 Hb_005743_030--Hb_021443_050 Hb_001534_040 Hb_001534_040 Hb_005743_030--Hb_001534_040 Hb_003095_110 Hb_003095_110 Hb_000318_400--Hb_003095_110 Hb_002016_130 Hb_002016_130 Hb_000318_400--Hb_002016_130 Hb_000776_020 Hb_000776_020 Hb_000318_400--Hb_000776_020 Hb_000574_030 Hb_000574_030 Hb_000318_400--Hb_000574_030 Hb_005288_060 Hb_005288_060 Hb_000318_400--Hb_005288_060 Hb_000567_150 Hb_000567_150 Hb_000318_400--Hb_000567_150 Hb_001005_040--Hb_002016_130 Hb_001288_050 Hb_001288_050 Hb_001005_040--Hb_001288_050 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_001005_040--Hb_000567_150 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_004864_010--Hb_021443_050 Hb_007035_010 Hb_007035_010 Hb_004864_010--Hb_007035_010 Hb_031201_010 Hb_031201_010 Hb_004864_010--Hb_031201_010 Hb_001866_100 Hb_001866_100 Hb_004864_010--Hb_001866_100 Hb_000856_130 Hb_000856_130 Hb_004864_010--Hb_000856_130 Hb_007205_020 Hb_007205_020 Hb_004864_010--Hb_007205_020 Hb_010812_140 Hb_010812_140 Hb_012023_010--Hb_010812_140 Hb_006096_020 Hb_006096_020 Hb_012023_010--Hb_006096_020 Hb_001619_010 Hb_001619_010 Hb_012023_010--Hb_001619_010 Hb_000059_080 Hb_000059_080 Hb_012023_010--Hb_000059_080 Hb_000600_080 Hb_000600_080 Hb_012023_010--Hb_000600_080 Hb_001677_230 Hb_001677_230 Hb_012023_010--Hb_001677_230 Hb_000191_100 Hb_000191_100 Hb_021443_050--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_021443_050--Hb_016637_020 Hb_021443_050--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_021443_050--Hb_170878_050 Hb_003517_100 Hb_003517_100 Hb_021443_050--Hb_003517_100 Hb_060822_010 Hb_060822_010 Hb_001534_040--Hb_060822_010 Hb_005436_030 Hb_005436_030 Hb_001534_040--Hb_005436_030 Hb_089299_010 Hb_089299_010 Hb_001534_040--Hb_089299_010 Hb_142051_010 Hb_142051_010 Hb_001534_040--Hb_142051_010 Hb_006810_010 Hb_006810_010 Hb_001534_040--Hb_006810_010 Hb_002809_090 Hb_002809_090 Hb_001534_040--Hb_002809_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0568748 0.0522497 0.0412189 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0492508 0 0.226084 0.30908

CAGE analysis