Hb_004864_010

Information

Type -
Description -
Location Contig4864: 10928-14008
Sequence    

Annotation

kegg
ID cic:CICLE_v10003960mg
description hypothetical protein
nr
ID XP_006432571.1
description hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4T8D6
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003960mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description guanosine nucleotide diphosphate dissociation inhibitor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004864_010 0.0 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
2 Hb_021443_050 0.1349452001 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007035_010 0.1404947708 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
4 Hb_031201_010 0.1440007062 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
5 Hb_001866_100 0.1468977624 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_000856_130 0.147699442 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_007205_020 0.1511549783 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
8 Hb_003913_040 0.1512262994 - - ferric reductase oxidase [Manihot esculenta]
9 Hb_119327_010 0.153168209 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
10 Hb_006588_020 0.1586680166 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_006827_030 0.160586265 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_002845_020 0.1640138274 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
13 Hb_002999_140 0.1643085833 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_000049_170 0.1663328844 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000009_390 0.1694035362 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
16 Hb_000640_330 0.1697818591 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001836_010 0.1733368478 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
18 Hb_012132_020 0.1734651908 - - glutamine synthetase [Hevea brasiliensis]
19 Hb_003683_200 0.1745548875 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
20 Hb_031862_200 0.177963856 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

Gene co-expression network

sample Hb_004864_010 Hb_004864_010 Hb_021443_050 Hb_021443_050 Hb_004864_010--Hb_021443_050 Hb_007035_010 Hb_007035_010 Hb_004864_010--Hb_007035_010 Hb_031201_010 Hb_031201_010 Hb_004864_010--Hb_031201_010 Hb_001866_100 Hb_001866_100 Hb_004864_010--Hb_001866_100 Hb_000856_130 Hb_000856_130 Hb_004864_010--Hb_000856_130 Hb_007205_020 Hb_007205_020 Hb_004864_010--Hb_007205_020 Hb_000191_100 Hb_000191_100 Hb_021443_050--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_021443_050--Hb_016637_020 Hb_021443_050--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_021443_050--Hb_170878_050 Hb_003517_100 Hb_003517_100 Hb_021443_050--Hb_003517_100 Hb_007035_010--Hb_001866_100 Hb_006827_030 Hb_006827_030 Hb_007035_010--Hb_006827_030 Hb_003680_010 Hb_003680_010 Hb_007035_010--Hb_003680_010 Hb_006588_020 Hb_006588_020 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_007035_010--Hb_000009_390 Hb_031201_010--Hb_007205_020 Hb_119327_010 Hb_119327_010 Hb_031201_010--Hb_119327_010 Hb_031201_010--Hb_003680_010 Hb_031201_010--Hb_007035_010 Hb_000776_020 Hb_000776_020 Hb_031201_010--Hb_000776_020 Hb_031201_010--Hb_006827_030 Hb_001866_100--Hb_000009_390 Hb_002845_020 Hb_002845_020 Hb_001866_100--Hb_002845_020 Hb_001866_100--Hb_006588_020 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_000856_130--Hb_021443_050 Hb_002400_080 Hb_002400_080 Hb_000856_130--Hb_002400_080 Hb_001497_040 Hb_001497_040 Hb_000856_130--Hb_001497_040 Hb_003913_040 Hb_003913_040 Hb_000856_130--Hb_003913_040 Hb_005743_030 Hb_005743_030 Hb_000856_130--Hb_005743_030 Hb_007205_020--Hb_002845_020 Hb_007205_020--Hb_016637_020 Hb_003494_180 Hb_003494_180 Hb_007205_020--Hb_003494_180 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.239082 0.237528 0.128484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0612901 0 0.249088 0.608056

CAGE analysis