Hb_008008_020

Information

Type -
Description -
Location Contig8008: 8292-13748
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008008_020 0.0 - - -
2 Hb_012286_080 0.1669433414 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
3 Hb_111854_010 0.1775079959 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_162086_010 0.2391033398 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
5 Hb_166631_010 0.2439325644 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
6 Hb_000060_070 0.2639343152 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
7 Hb_187024_090 0.2752704633 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_143398_020 0.2802881632 - - PREDICTED: 21 kDa protein [Populus euphratica]
9 Hb_000148_010 0.2909726285 - - -
10 Hb_000965_010 0.2936521823 - - hypothetical protein VITISV_016917 [Vitis vinifera]
11 Hb_004235_020 0.2952649538 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
12 Hb_004511_060 0.3029913273 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
13 Hb_002996_020 0.3091996786 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000976_200 0.314404357 - - -
15 Hb_002874_140 0.3170467715 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
16 Hb_093912_010 0.3175867527 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_067730_010 0.3209929493 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
18 Hb_113541_010 0.3216124574 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
19 Hb_009888_010 0.3230120497 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_029238_030 0.3260148511 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]

Gene co-expression network

sample Hb_008008_020 Hb_008008_020 Hb_012286_080 Hb_012286_080 Hb_008008_020--Hb_012286_080 Hb_111854_010 Hb_111854_010 Hb_008008_020--Hb_111854_010 Hb_162086_010 Hb_162086_010 Hb_008008_020--Hb_162086_010 Hb_166631_010 Hb_166631_010 Hb_008008_020--Hb_166631_010 Hb_000060_070 Hb_000060_070 Hb_008008_020--Hb_000060_070 Hb_187024_090 Hb_187024_090 Hb_008008_020--Hb_187024_090 Hb_012286_080--Hb_111854_010 Hb_012286_080--Hb_166631_010 Hb_187951_010 Hb_187951_010 Hb_012286_080--Hb_187951_010 Hb_000148_010 Hb_000148_010 Hb_012286_080--Hb_000148_010 Hb_143398_020 Hb_143398_020 Hb_012286_080--Hb_143398_020 Hb_004511_060 Hb_004511_060 Hb_111854_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_111854_010--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_111854_010--Hb_113541_010 Hb_000976_200 Hb_000976_200 Hb_111854_010--Hb_000976_200 Hb_007970_040 Hb_007970_040 Hb_111854_010--Hb_007970_040 Hb_162086_010--Hb_000060_070 Hb_162086_010--Hb_004511_060 Hb_162086_010--Hb_093912_010 Hb_007575_010 Hb_007575_010 Hb_162086_010--Hb_007575_010 Hb_162086_010--Hb_007970_040 Hb_000031_200 Hb_000031_200 Hb_162086_010--Hb_000031_200 Hb_166631_010--Hb_000148_010 Hb_000495_060 Hb_000495_060 Hb_166631_010--Hb_000495_060 Hb_000965_010 Hb_000965_010 Hb_166631_010--Hb_000965_010 Hb_006274_020 Hb_006274_020 Hb_166631_010--Hb_006274_020 Hb_000060_070--Hb_007575_010 Hb_000060_070--Hb_000031_200 Hb_003645_050 Hb_003645_050 Hb_000060_070--Hb_003645_050 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030 Hb_187024_090--Hb_000965_010 Hb_000685_090 Hb_000685_090 Hb_187024_090--Hb_000685_090 Hb_022793_010 Hb_022793_010 Hb_187024_090--Hb_022793_010 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_000084_170 Hb_000084_170 Hb_187024_090--Hb_000084_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0624455 0 0 0 0.0432653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0610564 0 0.0248109 0.242375

CAGE analysis