Hb_000685_090

Information

Type -
Description -
Location Contig685: 89522-89749
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012080915.1
description PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_090 0.0 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
2 Hb_022793_010 0.120024637 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
3 Hb_000965_010 0.1498525651 - - hypothetical protein VITISV_016917 [Vitis vinifera]
4 Hb_000495_060 0.2535671451 - - Osmotin precursor, putative [Ricinus communis]
5 Hb_187024_090 0.2567219072 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000084_170 0.2633124544 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000395_210 0.2942596844 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
8 Hb_002000_120 0.3163633769 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001596_010 0.3226014273 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
10 Hb_166631_010 0.3239985809 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
11 Hb_000175_020 0.3415287333 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000060_070 0.3444479909 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
13 Hb_003645_050 0.3468525618 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_136092_010 0.3475785364 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
15 Hb_000094_050 0.3482164717 - - -
16 Hb_082987_010 0.3486357761 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
17 Hb_162086_010 0.3557863699 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
18 Hb_005743_030 0.3593131052 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_001210_100 0.359596842 - - Gibberellin 20 oxidase, putative [Ricinus communis]
20 Hb_171693_010 0.3599138498 - - hypothetical protein JCGZ_26531 [Jatropha curcas]

Gene co-expression network

sample Hb_000685_090 Hb_000685_090 Hb_022793_010 Hb_022793_010 Hb_000685_090--Hb_022793_010 Hb_000965_010 Hb_000965_010 Hb_000685_090--Hb_000965_010 Hb_000495_060 Hb_000495_060 Hb_000685_090--Hb_000495_060 Hb_187024_090 Hb_187024_090 Hb_000685_090--Hb_187024_090 Hb_000084_170 Hb_000084_170 Hb_000685_090--Hb_000084_170 Hb_000395_210 Hb_000395_210 Hb_000685_090--Hb_000395_210 Hb_022793_010--Hb_000965_010 Hb_022793_010--Hb_000495_060 Hb_022793_010--Hb_187024_090 Hb_003645_050 Hb_003645_050 Hb_022793_010--Hb_003645_050 Hb_022793_010--Hb_000084_170 Hb_000965_010--Hb_000495_060 Hb_001596_010 Hb_001596_010 Hb_000965_010--Hb_001596_010 Hb_000965_010--Hb_187024_090 Hb_000060_070 Hb_000060_070 Hb_000965_010--Hb_000060_070 Hb_014967_010 Hb_014967_010 Hb_000495_060--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_000495_060--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_000495_060--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_000495_060--Hb_008755_020 Hb_110782_010 Hb_110782_010 Hb_000495_060--Hb_110782_010 Hb_008008_020 Hb_008008_020 Hb_187024_090--Hb_008008_020 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_187024_090--Hb_000084_170 Hb_054865_080 Hb_054865_080 Hb_000084_170--Hb_054865_080 Hb_000049_240 Hb_000049_240 Hb_000084_170--Hb_000049_240 Hb_026687_030 Hb_026687_030 Hb_000084_170--Hb_026687_030 Hb_004965_060 Hb_004965_060 Hb_000395_210--Hb_004965_060 Hb_001210_100 Hb_001210_100 Hb_000395_210--Hb_001210_100 Hb_000512_040 Hb_000512_040 Hb_000395_210--Hb_000512_040 Hb_001832_050 Hb_001832_050 Hb_000395_210--Hb_001832_050 Hb_000395_210--Hb_022793_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.482282 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.684093 0 0.643687 0.861083

CAGE analysis