Hb_000395_210

Information

Type -
Description -
Location Contig395: 211317-212187
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08040g
description POPTRDRAFT_825675; hypothetical protein
nr
ID XP_012077365.1
description PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
swissprot
ID Q8RXH2
description Nuclear pore complex protein NUP85 OS=Arabidopsis thaliana GN=NUP85 PE=1 SV=1
trembl
ID A0A067KPE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07726 PE=4 SV=1
Gene Ontology
ID GO:0006464
description nuclear pore complex protein nup85

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_210 0.0 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
2 Hb_004965_060 0.2776732701 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
3 Hb_001210_100 0.2849383159 - - Gibberellin 20 oxidase, putative [Ricinus communis]
4 Hb_000685_090 0.2942596844 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
5 Hb_000512_040 0.2956716093 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_001832_050 0.299590726 - - PREDICTED: cytokinin dehydrogenase 3 [Jatropha curcas]
7 Hb_022793_010 0.3075807152 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_000349_160 0.3193796656 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
9 Hb_000094_050 0.3209840418 - - -
10 Hb_011114_030 0.3248305916 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]
11 Hb_005618_110 0.325062227 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_159198_010 0.3252830847 - - hypothetical protein VITISV_033829 [Vitis vinifera]
13 Hb_000213_090 0.3252925469 - - hypothetical protein OsI_39056 [Oryza sativa Indica Group]
14 Hb_003878_100 0.3268496808 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
15 Hb_002740_170 0.3277882585 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
16 Hb_112203_010 0.3291000879 - - -
17 Hb_012636_010 0.3301487577 - - -
18 Hb_000175_020 0.330176655 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001140_320 0.3327887199 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
20 Hb_148121_030 0.3343233283 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]

Gene co-expression network

sample Hb_000395_210 Hb_000395_210 Hb_004965_060 Hb_004965_060 Hb_000395_210--Hb_004965_060 Hb_001210_100 Hb_001210_100 Hb_000395_210--Hb_001210_100 Hb_000685_090 Hb_000685_090 Hb_000395_210--Hb_000685_090 Hb_000512_040 Hb_000512_040 Hb_000395_210--Hb_000512_040 Hb_001832_050 Hb_001832_050 Hb_000395_210--Hb_001832_050 Hb_022793_010 Hb_022793_010 Hb_000395_210--Hb_022793_010 Hb_011114_030 Hb_011114_030 Hb_004965_060--Hb_011114_030 Hb_009545_020 Hb_009545_020 Hb_004965_060--Hb_009545_020 Hb_000067_030 Hb_000067_030 Hb_004965_060--Hb_000067_030 Hb_067034_030 Hb_067034_030 Hb_004965_060--Hb_067034_030 Hb_003142_090 Hb_003142_090 Hb_004965_060--Hb_003142_090 Hb_003120_040 Hb_003120_040 Hb_004965_060--Hb_003120_040 Hb_006916_180 Hb_006916_180 Hb_001210_100--Hb_006916_180 Hb_001534_040 Hb_001534_040 Hb_001210_100--Hb_001534_040 Hb_003935_010 Hb_003935_010 Hb_001210_100--Hb_003935_010 Hb_002000_120 Hb_002000_120 Hb_001210_100--Hb_002000_120 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_005436_030 Hb_005436_030 Hb_001210_100--Hb_005436_030 Hb_000685_090--Hb_022793_010 Hb_000965_010 Hb_000965_010 Hb_000685_090--Hb_000965_010 Hb_000495_060 Hb_000495_060 Hb_000685_090--Hb_000495_060 Hb_187024_090 Hb_187024_090 Hb_000685_090--Hb_187024_090 Hb_000084_170 Hb_000084_170 Hb_000685_090--Hb_000084_170 Hb_000221_170 Hb_000221_170 Hb_000512_040--Hb_000221_170 Hb_000876_050 Hb_000876_050 Hb_000512_040--Hb_000876_050 Hb_029508_030 Hb_029508_030 Hb_000512_040--Hb_029508_030 Hb_011174_100 Hb_011174_100 Hb_000512_040--Hb_011174_100 Hb_001709_070 Hb_001709_070 Hb_000512_040--Hb_001709_070 Hb_004162_040 Hb_004162_040 Hb_000512_040--Hb_004162_040 Hb_001405_150 Hb_001405_150 Hb_001832_050--Hb_001405_150 Hb_003987_030 Hb_003987_030 Hb_001832_050--Hb_003987_030 Hb_001006_280 Hb_001006_280 Hb_001832_050--Hb_001006_280 Hb_020178_010 Hb_020178_010 Hb_001832_050--Hb_020178_010 Hb_001832_050--Hb_004965_060 Hb_001832_050--Hb_011114_030 Hb_022793_010--Hb_000965_010 Hb_022793_010--Hb_000495_060 Hb_022793_010--Hb_187024_090 Hb_003645_050 Hb_003645_050 Hb_022793_010--Hb_003645_050 Hb_022793_010--Hb_000084_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.5767 0.119701 0 0.135085 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.398462 0 1.06551 0.479953

CAGE analysis