Hb_187024_090

Information

Type -
Description -
Location Contig187024: 162151-166021
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187024_090 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000965_010 0.2493725761 - - hypothetical protein VITISV_016917 [Vitis vinifera]
3 Hb_000685_090 0.2567219072 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_008008_020 0.2752704633 - - -
5 Hb_022793_010 0.2913960898 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
6 Hb_010691_010 0.2960736309 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_000084_170 0.305967412 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002874_140 0.3161256846 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
9 Hb_166631_010 0.3245576908 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
10 Hb_012286_080 0.3255663849 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
11 Hb_012239_010 0.330708593 - - -
12 Hb_000976_200 0.3319291143 - - -
13 Hb_000060_070 0.332483256 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
14 Hb_171693_010 0.3330400862 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
15 Hb_005183_180 0.3338092293 - - alpha amylase family protein [Populus trichocarpa]
16 Hb_111854_010 0.3495285341 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
17 Hb_026687_030 0.3529364607 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
18 Hb_000500_050 0.3532757086 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_000340_540 0.3548504452 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
20 Hb_002400_430 0.3573515846 - - -

Gene co-expression network

sample Hb_187024_090 Hb_187024_090 Hb_000965_010 Hb_000965_010 Hb_187024_090--Hb_000965_010 Hb_000685_090 Hb_000685_090 Hb_187024_090--Hb_000685_090 Hb_008008_020 Hb_008008_020 Hb_187024_090--Hb_008008_020 Hb_022793_010 Hb_022793_010 Hb_187024_090--Hb_022793_010 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_000084_170 Hb_000084_170 Hb_187024_090--Hb_000084_170 Hb_000965_010--Hb_000685_090 Hb_000495_060 Hb_000495_060 Hb_000965_010--Hb_000495_060 Hb_000965_010--Hb_022793_010 Hb_001596_010 Hb_001596_010 Hb_000965_010--Hb_001596_010 Hb_000060_070 Hb_000060_070 Hb_000965_010--Hb_000060_070 Hb_000685_090--Hb_022793_010 Hb_000685_090--Hb_000495_060 Hb_000685_090--Hb_000084_170 Hb_000395_210 Hb_000395_210 Hb_000685_090--Hb_000395_210 Hb_012286_080 Hb_012286_080 Hb_008008_020--Hb_012286_080 Hb_111854_010 Hb_111854_010 Hb_008008_020--Hb_111854_010 Hb_162086_010 Hb_162086_010 Hb_008008_020--Hb_162086_010 Hb_166631_010 Hb_166631_010 Hb_008008_020--Hb_166631_010 Hb_008008_020--Hb_000060_070 Hb_022793_010--Hb_000495_060 Hb_003645_050 Hb_003645_050 Hb_022793_010--Hb_003645_050 Hb_022793_010--Hb_000084_170 Hb_012239_050 Hb_012239_050 Hb_010691_010--Hb_012239_050 Hb_002000_120 Hb_002000_120 Hb_010691_010--Hb_002000_120 Hb_002475_150 Hb_002475_150 Hb_010691_010--Hb_002475_150 Hb_012132_020 Hb_012132_020 Hb_010691_010--Hb_012132_020 Hb_004864_010 Hb_004864_010 Hb_010691_010--Hb_004864_010 Hb_009615_180 Hb_009615_180 Hb_010691_010--Hb_009615_180 Hb_054865_080 Hb_054865_080 Hb_000084_170--Hb_054865_080 Hb_000049_240 Hb_000049_240 Hb_000084_170--Hb_000049_240 Hb_026687_030 Hb_026687_030 Hb_000084_170--Hb_026687_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.015917 0 0.00396924 0 0.00468903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0383141 0 0.0113872 0.0409871

CAGE analysis