Hb_012286_080

Information

Type -
Description -
Location Contig12286: 76985-79893
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06210g
description POPTRDRAFT_576417; Male sterility protein 2
nr
ID XP_012090891.1
description PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
swissprot
ID Q08891
description Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2
trembl
ID B9IID5
description Male sterility protein 2 OS=Populus trichocarpa GN=POPTR_0016s06210g PE=4 SV=2
Gene Ontology
ID GO:0016628
description fatty acyl- reductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_080 0.0 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
2 Hb_008008_020 0.1669433414 - - -
3 Hb_111854_010 0.25704655 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_166631_010 0.2656909888 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
5 Hb_187951_010 0.3057869048 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000148_010 0.3101889001 - - -
7 Hb_143398_020 0.3158976287 - - PREDICTED: 21 kDa protein [Populus euphratica]
8 Hb_098068_010 0.3184167054 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
9 Hb_000060_070 0.3192165951 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
10 Hb_067730_010 0.320085399 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
11 Hb_187024_090 0.3255663849 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002870_050 0.3285771904 - - -
13 Hb_002874_140 0.3342094884 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
14 Hb_002996_020 0.335069291 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_003645_050 0.3350765987 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_162086_010 0.3378348937 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
17 Hb_002374_130 0.3402391116 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
18 Hb_003940_050 0.3427505867 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_004235_020 0.3462511651 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
20 Hb_012753_070 0.3490391641 - - hypothetical protein VITISV_033646 [Vitis vinifera]

Gene co-expression network

sample Hb_012286_080 Hb_012286_080 Hb_008008_020 Hb_008008_020 Hb_012286_080--Hb_008008_020 Hb_111854_010 Hb_111854_010 Hb_012286_080--Hb_111854_010 Hb_166631_010 Hb_166631_010 Hb_012286_080--Hb_166631_010 Hb_187951_010 Hb_187951_010 Hb_012286_080--Hb_187951_010 Hb_000148_010 Hb_000148_010 Hb_012286_080--Hb_000148_010 Hb_143398_020 Hb_143398_020 Hb_012286_080--Hb_143398_020 Hb_008008_020--Hb_111854_010 Hb_162086_010 Hb_162086_010 Hb_008008_020--Hb_162086_010 Hb_008008_020--Hb_166631_010 Hb_000060_070 Hb_000060_070 Hb_008008_020--Hb_000060_070 Hb_187024_090 Hb_187024_090 Hb_008008_020--Hb_187024_090 Hb_004511_060 Hb_004511_060 Hb_111854_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_111854_010--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_111854_010--Hb_113541_010 Hb_000976_200 Hb_000976_200 Hb_111854_010--Hb_000976_200 Hb_007970_040 Hb_007970_040 Hb_111854_010--Hb_007970_040 Hb_166631_010--Hb_000148_010 Hb_000495_060 Hb_000495_060 Hb_166631_010--Hb_000495_060 Hb_000965_010 Hb_000965_010 Hb_166631_010--Hb_000965_010 Hb_006274_020 Hb_006274_020 Hb_166631_010--Hb_006274_020 Hb_002235_290 Hb_002235_290 Hb_187951_010--Hb_002235_290 Hb_037281_010 Hb_037281_010 Hb_187951_010--Hb_037281_010 Hb_097969_010 Hb_097969_010 Hb_187951_010--Hb_097969_010 Hb_000742_150 Hb_000742_150 Hb_187951_010--Hb_000742_150 Hb_002996_020 Hb_002996_020 Hb_187951_010--Hb_002996_020 Hb_033095_050 Hb_033095_050 Hb_000148_010--Hb_033095_050 Hb_005542_170 Hb_005542_170 Hb_000148_010--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_000148_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_000148_010--Hb_002249_200 Hb_002800_020 Hb_002800_020 Hb_000148_010--Hb_002800_020 Hb_005031_010 Hb_005031_010 Hb_000148_010--Hb_005031_010 Hb_004235_020 Hb_004235_020 Hb_143398_020--Hb_004235_020 Hb_009888_010 Hb_009888_010 Hb_143398_020--Hb_009888_010 Hb_065395_020 Hb_065395_020 Hb_143398_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_143398_020--Hb_001021_050 Hb_032717_090 Hb_032717_090 Hb_143398_020--Hb_032717_090 Hb_123951_010 Hb_123951_010 Hb_143398_020--Hb_123951_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0401347 0.0156689 0 0 0.0613009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0566322 0 0.022543 0.19914

CAGE analysis