Hb_037281_010

Information

Type -
Description -
Location Contig37281: 10749-15540
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037281_010 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_187951_010 0.2838259873 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_004076_040 0.3042951469 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_184746_010 0.3462087056 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
5 Hb_020469_010 0.3467202292 - - -
6 Hb_002235_290 0.3627859581 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
7 Hb_014720_130 0.3670113986 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
8 Hb_097969_010 0.375184274 - - F-box/LRR-repeat protein, putative [Ricinus communis]
9 Hb_004542_020 0.378113877 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
10 Hb_000347_050 0.3844926183 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
11 Hb_000946_170 0.3950838159 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_001369_760 0.3971328043 - - hypothetical protein PRUPE_ppa019417mg [Prunus persica]
13 Hb_001706_030 0.4043111697 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
14 Hb_062741_010 0.407341692 - - -
15 Hb_011310_090 0.4102384442 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
16 Hb_001141_300 0.4125633329 - - -
17 Hb_126395_010 0.415325635 - - hypothetical protein VITISV_043980 [Vitis vinifera]
18 Hb_145157_010 0.4217467965 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
19 Hb_062226_030 0.4257119764 - - -
20 Hb_011639_080 0.4290455331 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]

Gene co-expression network

sample Hb_037281_010 Hb_037281_010 Hb_187951_010 Hb_187951_010 Hb_037281_010--Hb_187951_010 Hb_004076_040 Hb_004076_040 Hb_037281_010--Hb_004076_040 Hb_184746_010 Hb_184746_010 Hb_037281_010--Hb_184746_010 Hb_020469_010 Hb_020469_010 Hb_037281_010--Hb_020469_010 Hb_002235_290 Hb_002235_290 Hb_037281_010--Hb_002235_290 Hb_014720_130 Hb_014720_130 Hb_037281_010--Hb_014720_130 Hb_187951_010--Hb_002235_290 Hb_012286_080 Hb_012286_080 Hb_187951_010--Hb_012286_080 Hb_097969_010 Hb_097969_010 Hb_187951_010--Hb_097969_010 Hb_000742_150 Hb_000742_150 Hb_187951_010--Hb_000742_150 Hb_002996_020 Hb_002996_020 Hb_187951_010--Hb_002996_020 Hb_177019_010 Hb_177019_010 Hb_004076_040--Hb_177019_010 Hb_001369_760 Hb_001369_760 Hb_004076_040--Hb_001369_760 Hb_005684_010 Hb_005684_010 Hb_004076_040--Hb_005684_010 Hb_005428_040 Hb_005428_040 Hb_004076_040--Hb_005428_040 Hb_011310_090 Hb_011310_090 Hb_004076_040--Hb_011310_090 Hb_078901_020 Hb_078901_020 Hb_184746_010--Hb_078901_020 Hb_001303_070 Hb_001303_070 Hb_184746_010--Hb_001303_070 Hb_184746_010--Hb_020469_010 Hb_183574_010 Hb_183574_010 Hb_184746_010--Hb_183574_010 Hb_004449_240 Hb_004449_240 Hb_184746_010--Hb_004449_240 Hb_062741_010 Hb_062741_010 Hb_184746_010--Hb_062741_010 Hb_041813_070 Hb_041813_070 Hb_020469_010--Hb_041813_070 Hb_004143_030 Hb_004143_030 Hb_020469_010--Hb_004143_030 Hb_126395_010 Hb_126395_010 Hb_020469_010--Hb_126395_010 Hb_115031_030 Hb_115031_030 Hb_020469_010--Hb_115031_030 Hb_004542_020 Hb_004542_020 Hb_020469_010--Hb_004542_020 Hb_173121_010 Hb_173121_010 Hb_002235_290--Hb_173121_010 Hb_011139_050 Hb_011139_050 Hb_002235_290--Hb_011139_050 Hb_002988_030 Hb_002988_030 Hb_002235_290--Hb_002988_030 Hb_006018_070 Hb_006018_070 Hb_002235_290--Hb_006018_070 Hb_002639_060 Hb_002639_060 Hb_002235_290--Hb_002639_060 Hb_002290_020 Hb_002290_020 Hb_014720_130--Hb_002290_020 Hb_000808_200 Hb_000808_200 Hb_014720_130--Hb_000808_200 Hb_005016_140 Hb_005016_140 Hb_014720_130--Hb_005016_140 Hb_000699_100 Hb_000699_100 Hb_014720_130--Hb_000699_100 Hb_000134_280 Hb_000134_280 Hb_014720_130--Hb_000134_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0104718 0 0.00839835 0.020239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00799947 0 0 0.0171561

CAGE analysis