Hb_004076_040

Information

Type -
Description -
Location Contig4076: 41800-46372
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004076_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_177019_010 0.2553481194 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
3 Hb_001369_760 0.2678951758 - - hypothetical protein PRUPE_ppa019417mg [Prunus persica]
4 Hb_005684_010 0.2983964339 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
5 Hb_037281_010 0.3042951469 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_005428_040 0.3080938177 - - -
7 Hb_011310_090 0.318555576 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
8 Hb_001631_100 0.3264311037 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_033555_010 0.3280679442 - - -
10 Hb_003940_050 0.3287396728 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_000094_030 0.3351985072 - - -
12 Hb_001427_030 0.3369364023 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000010_140 0.3373388632 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_145157_010 0.3390718048 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_004109_180 0.3398562027 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
16 Hb_000328_050 0.3451003759 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
17 Hb_002518_100 0.345663947 - - -
18 Hb_000656_050 0.345998186 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
19 Hb_001117_200 0.3528854685 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
20 Hb_002085_050 0.3538704669 - - PREDICTED: beta-galactosidase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_004076_040 Hb_004076_040 Hb_177019_010 Hb_177019_010 Hb_004076_040--Hb_177019_010 Hb_001369_760 Hb_001369_760 Hb_004076_040--Hb_001369_760 Hb_005684_010 Hb_005684_010 Hb_004076_040--Hb_005684_010 Hb_037281_010 Hb_037281_010 Hb_004076_040--Hb_037281_010 Hb_005428_040 Hb_005428_040 Hb_004076_040--Hb_005428_040 Hb_011310_090 Hb_011310_090 Hb_004076_040--Hb_011310_090 Hb_000656_050 Hb_000656_050 Hb_177019_010--Hb_000656_050 Hb_004934_120 Hb_004934_120 Hb_177019_010--Hb_004934_120 Hb_007254_030 Hb_007254_030 Hb_177019_010--Hb_007254_030 Hb_000668_130 Hb_000668_130 Hb_177019_010--Hb_000668_130 Hb_002518_100 Hb_002518_100 Hb_177019_010--Hb_002518_100 Hb_145157_010 Hb_145157_010 Hb_001369_760--Hb_145157_010 Hb_032208_080 Hb_032208_080 Hb_001369_760--Hb_032208_080 Hb_007894_220 Hb_007894_220 Hb_001369_760--Hb_007894_220 Hb_011639_080 Hb_011639_080 Hb_001369_760--Hb_011639_080 Hb_143629_060 Hb_143629_060 Hb_001369_760--Hb_143629_060 Hb_004109_180 Hb_004109_180 Hb_005684_010--Hb_004109_180 Hb_001427_020 Hb_001427_020 Hb_005684_010--Hb_001427_020 Hb_003020_210 Hb_003020_210 Hb_005684_010--Hb_003020_210 Hb_003758_020 Hb_003758_020 Hb_005684_010--Hb_003758_020 Hb_111722_010 Hb_111722_010 Hb_005684_010--Hb_111722_010 Hb_002471_300 Hb_002471_300 Hb_005684_010--Hb_002471_300 Hb_187951_010 Hb_187951_010 Hb_037281_010--Hb_187951_010 Hb_184746_010 Hb_184746_010 Hb_037281_010--Hb_184746_010 Hb_020469_010 Hb_020469_010 Hb_037281_010--Hb_020469_010 Hb_002235_290 Hb_002235_290 Hb_037281_010--Hb_002235_290 Hb_014720_130 Hb_014720_130 Hb_037281_010--Hb_014720_130 Hb_069512_010 Hb_069512_010 Hb_005428_040--Hb_069512_010 Hb_004807_050 Hb_004807_050 Hb_005428_040--Hb_004807_050 Hb_046157_010 Hb_046157_010 Hb_005428_040--Hb_046157_010 Hb_001421_030 Hb_001421_030 Hb_005428_040--Hb_001421_030 Hb_000340_270 Hb_000340_270 Hb_005428_040--Hb_000340_270 Hb_001087_010 Hb_001087_010 Hb_005428_040--Hb_001087_010 Hb_002518_110 Hb_002518_110 Hb_011310_090--Hb_002518_110 Hb_001141_300 Hb_001141_300 Hb_011310_090--Hb_001141_300 Hb_017098_010 Hb_017098_010 Hb_011310_090--Hb_017098_010 Hb_001631_100 Hb_001631_100 Hb_011310_090--Hb_001631_100 Hb_142328_010 Hb_142328_010 Hb_011310_090--Hb_142328_010 Hb_002636_040 Hb_002636_040 Hb_011310_090--Hb_002636_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00752949 0.00355976 0.00905507 0.0126694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00862649 0 0.00683379 0.0184833

CAGE analysis