Hb_143629_060

Information

Type -
Description -
Location Contig143629: 40112-47202
Sequence    

Annotation

kegg
ID rcu:RCOM_1437190
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012088793.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q8L7S8
description DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2
trembl
ID A0A067JUV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23147 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11484: 40100-47260 , PASA_asmbl_11485: 47916-48285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_060 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
2 Hb_000084_280 0.1285288075 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_002276_070 0.1339113435 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
4 Hb_004738_110 0.1348296442 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
5 Hb_007313_100 0.1362097434 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
6 Hb_008092_060 0.1475147317 - - -
7 Hb_002053_110 0.156532007 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003058_020 0.1587235017 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
9 Hb_001307_040 0.1629078321 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
10 Hb_002740_190 0.1643761485 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
11 Hb_005288_110 0.1682271873 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
12 Hb_001408_030 0.1702518042 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
13 Hb_004542_020 0.1704775319 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
14 Hb_002495_060 0.1741070096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_011931_060 0.1770872521 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
16 Hb_008092_050 0.1791048836 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
17 Hb_001437_120 0.1810267544 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
18 Hb_005470_020 0.1825227607 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
19 Hb_008123_010 0.1836680948 - - -
20 Hb_012165_020 0.1843152703 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]

Gene co-expression network

sample Hb_143629_060 Hb_143629_060 Hb_000084_280 Hb_000084_280 Hb_143629_060--Hb_000084_280 Hb_002276_070 Hb_002276_070 Hb_143629_060--Hb_002276_070 Hb_004738_110 Hb_004738_110 Hb_143629_060--Hb_004738_110 Hb_007313_100 Hb_007313_100 Hb_143629_060--Hb_007313_100 Hb_008092_060 Hb_008092_060 Hb_143629_060--Hb_008092_060 Hb_002053_110 Hb_002053_110 Hb_143629_060--Hb_002053_110 Hb_005470_020 Hb_005470_020 Hb_000084_280--Hb_005470_020 Hb_000948_170 Hb_000948_170 Hb_000084_280--Hb_000948_170 Hb_008206_060 Hb_008206_060 Hb_000084_280--Hb_008206_060 Hb_000015_100 Hb_000015_100 Hb_000084_280--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_000084_280--Hb_048141_020 Hb_000816_100 Hb_000816_100 Hb_000084_280--Hb_000816_100 Hb_001437_120 Hb_001437_120 Hb_002276_070--Hb_001437_120 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_028707_110 Hb_028707_110 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010 Hb_005288_110 Hb_005288_110 Hb_004738_110--Hb_005288_110 Hb_006052_030 Hb_006052_030 Hb_004738_110--Hb_006052_030 Hb_048141_030 Hb_048141_030 Hb_004738_110--Hb_048141_030 Hb_003058_020 Hb_003058_020 Hb_004738_110--Hb_003058_020 Hb_004738_110--Hb_002053_110 Hb_137276_010 Hb_137276_010 Hb_007313_100--Hb_137276_010 Hb_011931_060 Hb_011931_060 Hb_007313_100--Hb_011931_060 Hb_007313_100--Hb_003058_020 Hb_007313_110 Hb_007313_110 Hb_007313_100--Hb_007313_110 Hb_004987_070 Hb_004987_070 Hb_007313_100--Hb_004987_070 Hb_001408_030 Hb_001408_030 Hb_008092_060--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_008092_060--Hb_008092_050 Hb_008092_060--Hb_001437_120 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_008092_060--Hb_002276_070 Hb_000363_060 Hb_000363_060 Hb_002053_110--Hb_000363_060 Hb_002053_110--Hb_000816_100 Hb_001220_050 Hb_001220_050 Hb_002053_110--Hb_001220_050 Hb_007769_040 Hb_007769_040 Hb_002053_110--Hb_007769_040 Hb_000033_110 Hb_000033_110 Hb_002053_110--Hb_000033_110 Hb_001660_120 Hb_001660_120 Hb_002053_110--Hb_001660_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7325 11.1881 40.4328 21.5525 52.9127 61.6004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9514 4.89589 6.81282 14.2035 133.307

CAGE analysis