Hb_048141_030

Information

Type -
Description -
Location Contig48141: 44240-44833
Sequence    

Annotation

kegg
ID pmum:103328955
description pentatricopeptide repeat-containing protein At3g59040-like
nr
ID XP_008229603.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
swissprot
ID -
description -
trembl
ID M1BAZ4
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015924 PE=4 SV=1
Gene Ontology
ID GO:0006098
description pentatricopeptide repeat-containing protein at3g59040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44755: 17882-45063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048141_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
2 Hb_065525_130 0.1146158411 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000175_590 0.1219376518 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
4 Hb_000015_100 0.1266923926 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_006570_010 0.1271156402 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000085_140 0.1291222145 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
7 Hb_000948_170 0.130193592 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
8 Hb_003900_030 0.1302960791 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
9 Hb_008206_060 0.1308011459 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001916_100 0.1341406251 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
11 Hb_150651_030 0.1343213885 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
12 Hb_003992_030 0.1353575675 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
13 Hb_002681_170 0.1358970771 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
14 Hb_000084_280 0.1363783895 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_000849_020 0.1366828029 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
16 Hb_010812_050 0.1372098804 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
17 Hb_002027_090 0.1377829259 - - -
18 Hb_013726_080 0.1385028111 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_005271_160 0.1388050293 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
20 Hb_048141_020 0.1392545913 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]

Gene co-expression network

sample Hb_048141_030 Hb_048141_030 Hb_065525_130 Hb_065525_130 Hb_048141_030--Hb_065525_130 Hb_000175_590 Hb_000175_590 Hb_048141_030--Hb_000175_590 Hb_000015_100 Hb_000015_100 Hb_048141_030--Hb_000015_100 Hb_006570_010 Hb_006570_010 Hb_048141_030--Hb_006570_010 Hb_000085_140 Hb_000085_140 Hb_048141_030--Hb_000085_140 Hb_000948_170 Hb_000948_170 Hb_048141_030--Hb_000948_170 Hb_065525_130--Hb_000085_140 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_004951_070 Hb_004951_070 Hb_000175_590--Hb_004951_070 Hb_000390_310 Hb_000390_310 Hb_000175_590--Hb_000390_310 Hb_000175_590--Hb_065525_130 Hb_001652_080 Hb_001652_080 Hb_000175_590--Hb_001652_080 Hb_032202_230 Hb_032202_230 Hb_000175_590--Hb_032202_230 Hb_005276_130 Hb_005276_130 Hb_000175_590--Hb_005276_130 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000816_100 Hb_000816_100 Hb_000015_100--Hb_000816_100 Hb_000015_100--Hb_008206_060 Hb_006570_010--Hb_000085_140 Hb_006570_010--Hb_065525_130 Hb_001205_300 Hb_001205_300 Hb_006570_010--Hb_001205_300 Hb_006570_010--Hb_012098_150 Hb_003462_070 Hb_003462_070 Hb_006570_010--Hb_003462_070 Hb_001348_190 Hb_001348_190 Hb_006570_010--Hb_001348_190 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_032202_080 Hb_032202_080 Hb_000085_140--Hb_032202_080 Hb_001377_110 Hb_001377_110 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_098209_010 Hb_098209_010 Hb_000085_140--Hb_098209_010 Hb_000948_170--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000948_170--Hb_021346_030 Hb_000948_170--Hb_000627_250 Hb_000948_170--Hb_001205_300 Hb_000948_170--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2245 15.0913 38.4234 15.4058 42.7016 38.6214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09754 9.34436 8.15928 10.1149 42.4895

CAGE analysis