Hb_006570_010

Information

Type -
Description -
Location Contig6570: 10184-11751
Sequence    

Annotation

kegg
ID rcu:RCOM_1598210
description hypothetical protein
nr
ID XP_002510547.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8A4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1598210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000085_140 0.087233949 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
3 Hb_065525_130 0.1087690692 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_001205_300 0.1121981337 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
5 Hb_012098_150 0.116006095 - - ARC5 protein [Manihot esculenta]
6 Hb_003462_070 0.1160240088 - - arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_001348_190 0.1185486451 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
8 Hb_001105_050 0.1257265941 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
9 Hb_048141_030 0.1271156402 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
10 Hb_003104_040 0.1284286525 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
11 Hb_005276_130 0.1300734608 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007479_070 0.1302897363 - - peroxisomal membrane protein [Hevea brasiliensis]
13 Hb_010812_050 0.1303483221 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
14 Hb_008206_060 0.1316533594 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_014720_070 0.13229751 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
16 Hb_000948_170 0.1324798028 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
17 Hb_077026_010 0.1327227417 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
18 Hb_000175_590 0.1330256651 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
19 Hb_002304_060 0.1333214814 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
20 Hb_010150_020 0.1336530147 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_010 Hb_006570_010 Hb_000085_140 Hb_000085_140 Hb_006570_010--Hb_000085_140 Hb_065525_130 Hb_065525_130 Hb_006570_010--Hb_065525_130 Hb_001205_300 Hb_001205_300 Hb_006570_010--Hb_001205_300 Hb_012098_150 Hb_012098_150 Hb_006570_010--Hb_012098_150 Hb_003462_070 Hb_003462_070 Hb_006570_010--Hb_003462_070 Hb_001348_190 Hb_001348_190 Hb_006570_010--Hb_001348_190 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_032202_080 Hb_032202_080 Hb_000085_140--Hb_032202_080 Hb_000085_140--Hb_065525_130 Hb_001377_110 Hb_001377_110 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_098209_010 Hb_098209_010 Hb_000085_140--Hb_098209_010 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_001541_100 Hb_001541_100 Hb_012098_150--Hb_001541_100 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_003398_100 Hb_003398_100 Hb_012098_150--Hb_003398_100 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_003462_070--Hb_000740_050 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_000559_020 Hb_000559_020 Hb_001348_190--Hb_000559_020 Hb_000703_290 Hb_000703_290 Hb_001348_190--Hb_000703_290 Hb_002686_240 Hb_002686_240 Hb_001348_190--Hb_002686_240 Hb_004096_240 Hb_004096_240 Hb_001348_190--Hb_004096_240 Hb_003752_070 Hb_003752_070 Hb_001348_190--Hb_003752_070 Hb_000640_160 Hb_000640_160 Hb_001348_190--Hb_000640_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08596 1.82234 4.89621 2.52571 4.05178 4.56928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45144 1.07895 0.67589 1.42059 4.18911

CAGE analysis