Hb_005428_040

Information

Type -
Description -
Location Contig5428: 80094-81195
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005428_040 0.0 - - -
2 Hb_069512_010 0.2398555403 - - -
3 Hb_004807_050 0.2587443956 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
4 Hb_046157_010 0.2690470869 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
5 Hb_001421_030 0.2693362926 - - -
6 Hb_000340_270 0.2781489123 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
7 Hb_001087_010 0.2886549306 - - PREDICTED: uncharacterized protein LOC105630042 [Jatropha curcas]
8 Hb_007894_190 0.2903507639 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
9 Hb_000186_110 0.2918529974 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
10 Hb_001814_060 0.2922481364 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
11 Hb_000866_340 0.2950062126 - - DNA binding protein, putative [Ricinus communis]
12 Hb_062226_030 0.2950972573 - - -
13 Hb_001907_080 0.2985805972 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
14 Hb_015531_030 0.2986106843 - - conserved hypothetical protein [Ricinus communis]
15 Hb_051731_010 0.3010989 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_000915_190 0.3011873817 - - -
17 Hb_150651_020 0.3022679972 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_001221_200 0.3025813369 - - -
19 Hb_002043_100 0.3061178011 - - conserved hypothetical protein [Ricinus communis]
20 Hb_175841_010 0.3074352281 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]

Gene co-expression network

sample Hb_005428_040 Hb_005428_040 Hb_069512_010 Hb_069512_010 Hb_005428_040--Hb_069512_010 Hb_004807_050 Hb_004807_050 Hb_005428_040--Hb_004807_050 Hb_046157_010 Hb_046157_010 Hb_005428_040--Hb_046157_010 Hb_001421_030 Hb_001421_030 Hb_005428_040--Hb_001421_030 Hb_000340_270 Hb_000340_270 Hb_005428_040--Hb_000340_270 Hb_001087_010 Hb_001087_010 Hb_005428_040--Hb_001087_010 Hb_002043_100 Hb_002043_100 Hb_069512_010--Hb_002043_100 Hb_069512_010--Hb_046157_010 Hb_126933_020 Hb_126933_020 Hb_069512_010--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_069512_010--Hb_150651_020 Hb_002498_300 Hb_002498_300 Hb_069512_010--Hb_002498_300 Hb_004048_030 Hb_004048_030 Hb_069512_010--Hb_004048_030 Hb_004807_050--Hb_001421_030 Hb_004807_050--Hb_001087_010 Hb_021854_010 Hb_021854_010 Hb_004807_050--Hb_021854_010 Hb_000270_710 Hb_000270_710 Hb_004807_050--Hb_000270_710 Hb_004807_050--Hb_150651_020 Hb_002110_090 Hb_002110_090 Hb_004807_050--Hb_002110_090 Hb_046157_010--Hb_150651_020 Hb_001001_120 Hb_001001_120 Hb_046157_010--Hb_001001_120 Hb_046157_010--Hb_126933_020 Hb_046157_010--Hb_002043_100 Hb_001907_080 Hb_001907_080 Hb_046157_010--Hb_001907_080 Hb_022149_020 Hb_022149_020 Hb_001421_030--Hb_022149_020 Hb_001421_030--Hb_001087_010 Hb_009838_020 Hb_009838_020 Hb_001421_030--Hb_009838_020 Hb_001421_030--Hb_002110_090 Hb_001146_050 Hb_001146_050 Hb_001421_030--Hb_001146_050 Hb_010743_010 Hb_010743_010 Hb_000340_270--Hb_010743_010 Hb_004837_250 Hb_004837_250 Hb_000340_270--Hb_004837_250 Hb_137222_010 Hb_137222_010 Hb_000340_270--Hb_137222_010 Hb_001409_080 Hb_001409_080 Hb_000340_270--Hb_001409_080 Hb_176680_010 Hb_176680_010 Hb_000340_270--Hb_176680_010 Hb_026437_020 Hb_026437_020 Hb_000340_270--Hb_026437_020 Hb_000906_070 Hb_000906_070 Hb_001087_010--Hb_000906_070 Hb_000992_020 Hb_000992_020 Hb_001087_010--Hb_000992_020 Hb_010984_010 Hb_010984_010 Hb_001087_010--Hb_010984_010 Hb_000803_220 Hb_000803_220 Hb_001087_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_001087_010--Hb_007894_190 Hb_000359_220 Hb_000359_220 Hb_001087_010--Hb_000359_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0881782 0.0237944 0.0285681 0.0502926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0416126 0.103507

CAGE analysis