Hb_026437_020

Information

Type -
Description -
Location Contig26437: 4900-6360
Sequence    

Annotation

kegg
ID rcu:RCOM_0319990
description ring finger protein, putative
nr
ID XP_002533989.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q940Q4
description RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2
trembl
ID B9T6X0
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0319990 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026437_020 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_002762_050 0.0932734391 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
3 Hb_000694_080 0.0976325536 - - phosphoribulose kinase, putative [Ricinus communis]
4 Hb_087599_010 0.1075378193 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
5 Hb_000017_210 0.1081856464 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
6 Hb_000185_010 0.108503542 - - Alliin lyase precursor, putative [Ricinus communis]
7 Hb_000026_060 0.1140681865 - - beta-1,3-glucanase [Manihot esculenta]
8 Hb_000483_440 0.1164168961 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000482_030 0.1165980327 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
10 Hb_000008_160 0.1185956774 - - carboxy-lyase, putative [Ricinus communis]
11 Hb_007426_070 0.119608137 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
12 Hb_004146_030 0.1204398466 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_002333_040 0.1215147555 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
14 Hb_008143_010 0.125741907 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
15 Hb_002870_070 0.1266935902 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_003171_040 0.1277794399 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_001300_240 0.1294671708 - - shikimate dehydrogenase, putative [Ricinus communis]
18 Hb_000012_370 0.1296550271 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004162_250 0.1299999387 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
20 Hb_002093_020 0.1309174637 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]

Gene co-expression network

sample Hb_026437_020 Hb_026437_020 Hb_002762_050 Hb_002762_050 Hb_026437_020--Hb_002762_050 Hb_000694_080 Hb_000694_080 Hb_026437_020--Hb_000694_080 Hb_087599_010 Hb_087599_010 Hb_026437_020--Hb_087599_010 Hb_000017_210 Hb_000017_210 Hb_026437_020--Hb_000017_210 Hb_000185_010 Hb_000185_010 Hb_026437_020--Hb_000185_010 Hb_000026_060 Hb_000026_060 Hb_026437_020--Hb_000026_060 Hb_002762_050--Hb_087599_010 Hb_012807_030 Hb_012807_030 Hb_002762_050--Hb_012807_030 Hb_000008_160 Hb_000008_160 Hb_002762_050--Hb_000008_160 Hb_002762_050--Hb_000694_080 Hb_003777_080 Hb_003777_080 Hb_002762_050--Hb_003777_080 Hb_156093_010 Hb_156093_010 Hb_002762_050--Hb_156093_010 Hb_000694_080--Hb_000017_210 Hb_000482_030 Hb_000482_030 Hb_000694_080--Hb_000482_030 Hb_000694_080--Hb_087599_010 Hb_007426_070 Hb_007426_070 Hb_000694_080--Hb_007426_070 Hb_000483_440 Hb_000483_440 Hb_000694_080--Hb_000483_440 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_087599_010--Hb_003777_080 Hb_087599_010--Hb_000185_010 Hb_002093_020 Hb_002093_020 Hb_087599_010--Hb_002093_020 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040 Hb_000017_210--Hb_000483_440 Hb_000017_210--Hb_007426_070 Hb_000017_210--Hb_000482_030 Hb_004146_030 Hb_004146_030 Hb_000017_210--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000017_210--Hb_005305_070 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000185_010--Hb_000012_370 Hb_000185_010--Hb_000008_160 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_080791_010 Hb_080791_010 Hb_000026_060--Hb_080791_010 Hb_000026_060--Hb_004146_030 Hb_000858_050 Hb_000858_050 Hb_000026_060--Hb_000858_050 Hb_003171_040 Hb_003171_040 Hb_000026_060--Hb_003171_040 Hb_015817_010 Hb_015817_010 Hb_000026_060--Hb_015817_010 Hb_000026_060--Hb_007426_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.192069 3.71106 1.24087 0.168023 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.586556 8.15044

CAGE analysis