Hb_046157_010

Information

Type -
Description -
Location Contig46157: 2347-3337
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19480g
description POPTRDRAFT_416119; hypothetical protein
nr
ID XP_012078526.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID A0A067KK10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13145 PE=3 SV=1
Gene Ontology
ID GO:0016772
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046157_010 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
2 Hb_069512_010 0.1610694043 - - -
3 Hb_150651_020 0.1753657813 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_001001_120 0.1808393426 - - protein phosphatase, putative [Ricinus communis]
5 Hb_126933_020 0.1809433937 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
6 Hb_002043_100 0.1819869851 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001907_080 0.1832205868 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
8 Hb_000186_110 0.2008337154 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
9 Hb_007894_190 0.2058430279 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
10 Hb_001597_020 0.2066096753 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
11 Hb_172426_060 0.20684922 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
12 Hb_004635_070 0.2089751372 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
13 Hb_024399_020 0.209955713 - - electron transporter, putative [Ricinus communis]
14 Hb_000062_480 0.2101077318 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
15 Hb_005488_190 0.2161798724 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_001365_030 0.2169336181 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
17 Hb_000009_020 0.2171180122 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
18 Hb_004117_150 0.218476248 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
19 Hb_004807_050 0.2202178233 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
20 Hb_001942_020 0.2225170836 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_046157_010 Hb_046157_010 Hb_069512_010 Hb_069512_010 Hb_046157_010--Hb_069512_010 Hb_150651_020 Hb_150651_020 Hb_046157_010--Hb_150651_020 Hb_001001_120 Hb_001001_120 Hb_046157_010--Hb_001001_120 Hb_126933_020 Hb_126933_020 Hb_046157_010--Hb_126933_020 Hb_002043_100 Hb_002043_100 Hb_046157_010--Hb_002043_100 Hb_001907_080 Hb_001907_080 Hb_046157_010--Hb_001907_080 Hb_069512_010--Hb_002043_100 Hb_069512_010--Hb_126933_020 Hb_069512_010--Hb_150651_020 Hb_002498_300 Hb_002498_300 Hb_069512_010--Hb_002498_300 Hb_004048_030 Hb_004048_030 Hb_069512_010--Hb_004048_030 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_150651_020--Hb_126933_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_001365_030 Hb_001365_030 Hb_001001_120--Hb_001365_030 Hb_001001_120--Hb_001597_020 Hb_001001_120--Hb_004635_070 Hb_002942_140 Hb_002942_140 Hb_001001_120--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_001001_120--Hb_003175_070 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_005488_190 Hb_005488_190 Hb_126933_020--Hb_005488_190 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_126933_020--Hb_001365_030 Hb_002043_100--Hb_001907_080 Hb_001421_040 Hb_001421_040 Hb_002043_100--Hb_001421_040 Hb_001377_060 Hb_001377_060 Hb_002043_100--Hb_001377_060 Hb_016687_010 Hb_016687_010 Hb_002043_100--Hb_016687_010 Hb_002043_100--Hb_005488_190 Hb_000193_220 Hb_000193_220 Hb_001907_080--Hb_000193_220 Hb_009692_040 Hb_009692_040 Hb_001907_080--Hb_009692_040 Hb_010721_020 Hb_010721_020 Hb_001907_080--Hb_010721_020 Hb_002960_040 Hb_002960_040 Hb_001907_080--Hb_002960_040 Hb_000118_090 Hb_000118_090 Hb_001907_080--Hb_000118_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163652 0.0234589 1.02343 0.312183 0.0922144 0.177806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.077278 0.322109 1.20214

CAGE analysis