Hb_002498_300

Information

Type -
Description -
Location Contig2498: 184985-188397
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDY27391.1
description BnaC04g50140D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A0D3C6C7
description Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_300 0.0 - - BnaC04g50140D [Brassica napus]
2 Hb_004705_070 0.1467595676 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
3 Hb_126933_020 0.1488500804 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
4 Hb_150651_020 0.1555755369 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_004208_090 0.1563983631 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_002400_010 0.1643528616 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
7 Hb_000093_140 0.1672039867 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
8 Hb_004635_070 0.1678498856 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
9 Hb_005488_190 0.1689952621 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_003683_030 0.1691399962 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
11 Hb_000934_260 0.1696063733 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_003894_060 0.17012486 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004855_070 0.170268791 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
14 Hb_001751_060 0.1712895406 - - PREDICTED: SEC12-like protein 1 [Jatropha curcas]
15 Hb_000056_310 0.176533271 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
16 Hb_164926_010 0.176837458 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
17 Hb_000322_040 0.1774376373 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
18 Hb_006252_030 0.1776176533 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
19 Hb_001953_100 0.1776179692 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
20 Hb_003470_100 0.1781152567 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002498_300 Hb_002498_300 Hb_004705_070 Hb_004705_070 Hb_002498_300--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_002498_300--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_002498_300--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_002498_300--Hb_004208_090 Hb_002400_010 Hb_002400_010 Hb_002498_300--Hb_002400_010 Hb_000093_140 Hb_000093_140 Hb_002498_300--Hb_000093_140 Hb_004705_070--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_004705_070--Hb_001597_020 Hb_050847_040 Hb_050847_040 Hb_004705_070--Hb_050847_040 Hb_004705_070--Hb_126933_020 Hb_010683_030 Hb_010683_030 Hb_004705_070--Hb_010683_030 Hb_003894_060 Hb_003894_060 Hb_004705_070--Hb_003894_060 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_005488_190 Hb_005488_190 Hb_126933_020--Hb_005488_190 Hb_126933_020--Hb_150651_020 Hb_126933_020--Hb_004208_090 Hb_001365_030 Hb_001365_030 Hb_126933_020--Hb_001365_030 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_150651_020--Hb_001597_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_001999_260 Hb_001999_260 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004117_150 Hb_004117_150 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_002400_010--Hb_004208_090 Hb_000056_310 Hb_000056_310 Hb_002400_010--Hb_000056_310 Hb_002400_010--Hb_000934_260 Hb_000749_200 Hb_000749_200 Hb_002400_010--Hb_000749_200 Hb_006252_030 Hb_006252_030 Hb_002400_010--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_002400_010--Hb_000322_040 Hb_004346_040 Hb_004346_040 Hb_000093_140--Hb_004346_040 Hb_000093_140--Hb_003894_060 Hb_003055_070 Hb_003055_070 Hb_000093_140--Hb_003055_070 Hb_007765_130 Hb_007765_130 Hb_000093_140--Hb_007765_130 Hb_005214_070 Hb_005214_070 Hb_000093_140--Hb_005214_070 Hb_004324_120 Hb_004324_120 Hb_000093_140--Hb_004324_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.234685 0.273153 1.44407 0.503589 0.13639 0.209219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.143851 0 0.202087 1.33179

CAGE analysis