Hb_004807_050

Information

Type -
Description -
Location Contig4807: 46338-46613
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17300g
description POPTRDRAFT_648723; hypothetical protein
nr
ID XP_002306157.1
description hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
swissprot
ID Q9C7Q1
description Auxin-responsive protein SAUR66 OS=Arabidopsis thaliana GN=SAUR66 PE=2 SV=1
trembl
ID B9H127
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44728: 46230-46687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_050 0.0 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
2 Hb_001421_030 0.1710184438 - - -
3 Hb_001087_010 0.1883305475 - - PREDICTED: uncharacterized protein LOC105630042 [Jatropha curcas]
4 Hb_021854_010 0.1949362048 - - -
5 Hb_000270_710 0.1978777479 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
6 Hb_150651_020 0.1981571656 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_002110_090 0.1997517743 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
8 Hb_035834_010 0.202658598 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000696_190 0.2045886535 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
10 Hb_000333_030 0.2083186248 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_033683_010 0.2097930513 - - myo inositol monophosphatase, putative [Ricinus communis]
12 Hb_000200_330 0.2111743531 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_001597_020 0.2112810215 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
14 Hb_001365_020 0.2133672877 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
15 Hb_002869_060 0.2139319491 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
16 Hb_000977_290 0.2162154048 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
17 Hb_001907_080 0.2162488581 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
18 Hb_001269_520 0.2170736951 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
19 Hb_004635_070 0.2172776605 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
20 Hb_050847_040 0.2184947224 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]

Gene co-expression network

sample Hb_004807_050 Hb_004807_050 Hb_001421_030 Hb_001421_030 Hb_004807_050--Hb_001421_030 Hb_001087_010 Hb_001087_010 Hb_004807_050--Hb_001087_010 Hb_021854_010 Hb_021854_010 Hb_004807_050--Hb_021854_010 Hb_000270_710 Hb_000270_710 Hb_004807_050--Hb_000270_710 Hb_150651_020 Hb_150651_020 Hb_004807_050--Hb_150651_020 Hb_002110_090 Hb_002110_090 Hb_004807_050--Hb_002110_090 Hb_022149_020 Hb_022149_020 Hb_001421_030--Hb_022149_020 Hb_001421_030--Hb_001087_010 Hb_009838_020 Hb_009838_020 Hb_001421_030--Hb_009838_020 Hb_001421_030--Hb_002110_090 Hb_001146_050 Hb_001146_050 Hb_001421_030--Hb_001146_050 Hb_000906_070 Hb_000906_070 Hb_001087_010--Hb_000906_070 Hb_000992_020 Hb_000992_020 Hb_001087_010--Hb_000992_020 Hb_010984_010 Hb_010984_010 Hb_001087_010--Hb_010984_010 Hb_000803_220 Hb_000803_220 Hb_001087_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_001087_010--Hb_007894_190 Hb_000359_220 Hb_000359_220 Hb_001087_010--Hb_000359_220 Hb_113119_010 Hb_113119_010 Hb_021854_010--Hb_113119_010 Hb_021854_020 Hb_021854_020 Hb_021854_010--Hb_021854_020 Hb_001310_050 Hb_001310_050 Hb_021854_010--Hb_001310_050 Hb_001365_010 Hb_001365_010 Hb_021854_010--Hb_001365_010 Hb_001894_010 Hb_001894_010 Hb_021854_010--Hb_001894_010 Hb_005181_060 Hb_005181_060 Hb_021854_010--Hb_005181_060 Hb_002320_090 Hb_002320_090 Hb_000270_710--Hb_002320_090 Hb_000696_190 Hb_000696_190 Hb_000270_710--Hb_000696_190 Hb_006916_030 Hb_006916_030 Hb_000270_710--Hb_006916_030 Hb_000270_830 Hb_000270_830 Hb_000270_710--Hb_000270_830 Hb_035834_010 Hb_035834_010 Hb_000270_710--Hb_035834_010 Hb_000964_170 Hb_000964_170 Hb_000270_710--Hb_000964_170 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_150651_020--Hb_126933_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_150651_020--Hb_007894_190 Hb_001269_520 Hb_001269_520 Hb_002110_090--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_002110_090--Hb_000251_050 Hb_003177_090 Hb_003177_090 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_000181_230 Hb_000181_230 Hb_002110_090--Hb_000181_230 Hb_002099_060 Hb_002099_060 Hb_002110_090--Hb_002099_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.597935 0.626514 4.94715 4.89867 1.20149 1.60444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.12844 8.10149

CAGE analysis