Hb_145157_010

Information

Type -
Description -
Location Contig145157: 2-628
Sequence    

Annotation

kegg
ID cmo:103496240
description uncharacterized LOC103496240
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145157_010 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_032208_080 0.216163575 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
3 Hb_001369_760 0.2266751987 - - hypothetical protein PRUPE_ppa019417mg [Prunus persica]
4 Hb_161207_010 0.2601825922 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_032705_020 0.2756401853 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
6 Hb_000754_050 0.2815772502 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
7 Hb_004289_040 0.2975294996 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
8 Hb_003020_290 0.2982925138 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
9 Hb_000184_030 0.2996956147 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_067069_010 0.3050445384 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
11 Hb_000062_520 0.3053239611 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006856_030 0.3076048737 - - Uridine kinase-like protein 4 [Glycine soja]
13 Hb_007894_220 0.3113025081 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
14 Hb_003915_040 0.3128678775 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
15 Hb_000296_080 0.3133721491 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
16 Hb_182831_010 0.3134772382 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000816_220 0.3154284553 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
18 Hb_005588_110 0.3176373235 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
19 Hb_002534_030 0.3226829864 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_002518_120 0.3230442691 - - hypothetical protein RCOM_0731250 [Ricinus communis]

Gene co-expression network

sample Hb_145157_010 Hb_145157_010 Hb_032208_080 Hb_032208_080 Hb_145157_010--Hb_032208_080 Hb_001369_760 Hb_001369_760 Hb_145157_010--Hb_001369_760 Hb_161207_010 Hb_161207_010 Hb_145157_010--Hb_161207_010 Hb_032705_020 Hb_032705_020 Hb_145157_010--Hb_032705_020 Hb_000754_050 Hb_000754_050 Hb_145157_010--Hb_000754_050 Hb_004289_040 Hb_004289_040 Hb_145157_010--Hb_004289_040 Hb_032208_080--Hb_001369_760 Hb_006856_030 Hb_006856_030 Hb_032208_080--Hb_006856_030 Hb_032208_080--Hb_161207_010 Hb_003622_020 Hb_003622_020 Hb_032208_080--Hb_003622_020 Hb_011574_010 Hb_011574_010 Hb_032208_080--Hb_011574_010 Hb_004076_040 Hb_004076_040 Hb_001369_760--Hb_004076_040 Hb_007894_220 Hb_007894_220 Hb_001369_760--Hb_007894_220 Hb_011639_080 Hb_011639_080 Hb_001369_760--Hb_011639_080 Hb_143629_060 Hb_143629_060 Hb_001369_760--Hb_143629_060 Hb_000184_030 Hb_000184_030 Hb_161207_010--Hb_000184_030 Hb_005496_100 Hb_005496_100 Hb_161207_010--Hb_005496_100 Hb_009615_180 Hb_009615_180 Hb_161207_010--Hb_009615_180 Hb_161207_010--Hb_003622_020 Hb_000473_060 Hb_000473_060 Hb_161207_010--Hb_000473_060 Hb_003915_040 Hb_003915_040 Hb_032705_020--Hb_003915_040 Hb_032705_020--Hb_004289_040 Hb_182831_010 Hb_182831_010 Hb_032705_020--Hb_182831_010 Hb_028751_020 Hb_028751_020 Hb_032705_020--Hb_028751_020 Hb_001496_140 Hb_001496_140 Hb_032705_020--Hb_001496_140 Hb_001484_080 Hb_001484_080 Hb_000754_050--Hb_001484_080 Hb_000296_080 Hb_000296_080 Hb_000754_050--Hb_000296_080 Hb_005588_110 Hb_005588_110 Hb_000754_050--Hb_005588_110 Hb_000402_170 Hb_000402_170 Hb_000754_050--Hb_000402_170 Hb_036790_120 Hb_036790_120 Hb_000754_050--Hb_036790_120 Hb_000977_270 Hb_000977_270 Hb_000754_050--Hb_000977_270 Hb_003124_210 Hb_003124_210 Hb_004289_040--Hb_003124_210 Hb_000545_120 Hb_000545_120 Hb_004289_040--Hb_000545_120 Hb_014440_010 Hb_014440_010 Hb_004289_040--Hb_014440_010 Hb_002811_340 Hb_002811_340 Hb_004289_040--Hb_002811_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0329721 0.0386217 0.115029 0.116572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0946384 0.148768 0 0.0304282 0.579732

CAGE analysis