Hb_032208_080

Information

Type -
Description -
Location Contig32208: 62035-63960
Sequence    

Annotation

kegg
ID rcu:RCOM_0878400
description Phytoene synthase, chloroplast precursor, putative
nr
ID XP_012085035.1
description PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID P37272
description Bifunctional 15-cis-phytoene synthase, chromoplast OS=Capsicum annuum GN=PSY1 PE=1 SV=1
trembl
ID A0A067K549
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21037 PE=4 SV=1
Gene Ontology
ID GO:0009536
description phytoene synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_080 0.0 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
2 Hb_145157_010 0.216163575 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
3 Hb_001369_760 0.2478320228 - - hypothetical protein PRUPE_ppa019417mg [Prunus persica]
4 Hb_006856_030 0.2799277236 - - Uridine kinase-like protein 4 [Glycine soja]
5 Hb_161207_010 0.2803957561 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_003622_020 0.2818718804 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
7 Hb_011574_010 0.2873892929 - - -
8 Hb_000329_520 0.2981586384 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
9 Hb_020250_020 0.303459905 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
10 Hb_000890_110 0.3069382775 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
11 Hb_000012_440 0.3076867298 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
12 Hb_005656_150 0.3129123124 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
13 Hb_002411_020 0.3153882445 - - hypothetical protein JCGZ_24577 [Jatropha curcas]
14 Hb_007002_010 0.3163331144 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
15 Hb_003038_150 0.3172263474 - - -
16 Hb_004987_030 0.3175613127 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
17 Hb_000367_140 0.3185061484 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
18 Hb_000056_090 0.3212291694 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
19 Hb_068031_010 0.3218770909 - - hypothetical protein VITISV_034229 [Vitis vinifera]
20 Hb_000184_030 0.3222281861 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_032208_080 Hb_032208_080 Hb_145157_010 Hb_145157_010 Hb_032208_080--Hb_145157_010 Hb_001369_760 Hb_001369_760 Hb_032208_080--Hb_001369_760 Hb_006856_030 Hb_006856_030 Hb_032208_080--Hb_006856_030 Hb_161207_010 Hb_161207_010 Hb_032208_080--Hb_161207_010 Hb_003622_020 Hb_003622_020 Hb_032208_080--Hb_003622_020 Hb_011574_010 Hb_011574_010 Hb_032208_080--Hb_011574_010 Hb_145157_010--Hb_001369_760 Hb_145157_010--Hb_161207_010 Hb_032705_020 Hb_032705_020 Hb_145157_010--Hb_032705_020 Hb_000754_050 Hb_000754_050 Hb_145157_010--Hb_000754_050 Hb_004289_040 Hb_004289_040 Hb_145157_010--Hb_004289_040 Hb_004076_040 Hb_004076_040 Hb_001369_760--Hb_004076_040 Hb_007894_220 Hb_007894_220 Hb_001369_760--Hb_007894_220 Hb_011639_080 Hb_011639_080 Hb_001369_760--Hb_011639_080 Hb_143629_060 Hb_143629_060 Hb_001369_760--Hb_143629_060 Hb_000402_170 Hb_000402_170 Hb_006856_030--Hb_000402_170 Hb_003427_080 Hb_003427_080 Hb_006856_030--Hb_003427_080 Hb_006856_030--Hb_003622_020 Hb_000890_110 Hb_000890_110 Hb_006856_030--Hb_000890_110 Hb_006856_030--Hb_000754_050 Hb_003777_020 Hb_003777_020 Hb_006856_030--Hb_003777_020 Hb_000184_030 Hb_000184_030 Hb_161207_010--Hb_000184_030 Hb_005496_100 Hb_005496_100 Hb_161207_010--Hb_005496_100 Hb_009615_180 Hb_009615_180 Hb_161207_010--Hb_009615_180 Hb_161207_010--Hb_003622_020 Hb_000473_060 Hb_000473_060 Hb_161207_010--Hb_000473_060 Hb_000521_090 Hb_000521_090 Hb_003622_020--Hb_000521_090 Hb_126917_010 Hb_126917_010 Hb_003622_020--Hb_126917_010 Hb_003077_130 Hb_003077_130 Hb_003622_020--Hb_003077_130 Hb_003622_020--Hb_003427_080 Hb_002681_080 Hb_002681_080 Hb_003622_020--Hb_002681_080 Hb_002249_210 Hb_002249_210 Hb_011574_010--Hb_002249_210 Hb_003038_150 Hb_003038_150 Hb_011574_010--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_011574_010--Hb_000703_300 Hb_005656_150 Hb_005656_150 Hb_011574_010--Hb_005656_150 Hb_023675_030 Hb_023675_030 Hb_011574_010--Hb_023675_030 Hb_001488_260 Hb_001488_260 Hb_011574_010--Hb_001488_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0144389 0.0571275 0.110116 0.0193226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0418214 0.0328968 0 0.0263688 0.407902

CAGE analysis