Hb_032705_020

Information

Type -
Description -
Location Contig32705: 24255-27841
Sequence    

Annotation

kegg
ID tcc:TCM_038736
description hypothetical protein
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID Q52QI2
description Retrotransposon-like protein 1 OS=Bos taurus GN=RTL1 PE=2 SV=2
trembl
ID A0A061GPE8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038736 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032705_020 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_003915_040 0.2727435744 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
3 Hb_145157_010 0.2756401853 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
4 Hb_004289_040 0.2761936545 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
5 Hb_182831_010 0.2891629221 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_028751_020 0.3077162166 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
7 Hb_001496_140 0.3175398572 - - -
8 Hb_000742_150 0.3221495728 - - -
9 Hb_003057_010 0.3265035354 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
10 Hb_001369_760 0.3362199453 - - hypothetical protein PRUPE_ppa019417mg [Prunus persica]
11 Hb_002243_070 0.3383963059 - - sodium-bile acid cotransporter, putative [Ricinus communis]
12 Hb_002888_020 0.3404797937 - - -
13 Hb_000375_180 0.3408194249 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
14 Hb_000703_270 0.3421430859 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
15 Hb_003124_020 0.3485265705 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
16 Hb_002260_260 0.3533904992 - - hypothetical protein VITISV_037667 [Vitis vinifera]
17 Hb_003813_160 0.3562337656 - - -
18 Hb_000256_200 0.3568755535 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001080_220 0.3619409639 - - TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
20 Hb_000038_050 0.3672908736 - - -

Gene co-expression network

sample Hb_032705_020 Hb_032705_020 Hb_003915_040 Hb_003915_040 Hb_032705_020--Hb_003915_040 Hb_145157_010 Hb_145157_010 Hb_032705_020--Hb_145157_010 Hb_004289_040 Hb_004289_040 Hb_032705_020--Hb_004289_040 Hb_182831_010 Hb_182831_010 Hb_032705_020--Hb_182831_010 Hb_028751_020 Hb_028751_020 Hb_032705_020--Hb_028751_020 Hb_001496_140 Hb_001496_140 Hb_032705_020--Hb_001496_140 Hb_000742_150 Hb_000742_150 Hb_003915_040--Hb_000742_150 Hb_000148_010 Hb_000148_010 Hb_003915_040--Hb_000148_010 Hb_007083_040 Hb_007083_040 Hb_003915_040--Hb_007083_040 Hb_004994_370 Hb_004994_370 Hb_003915_040--Hb_004994_370 Hb_003915_040--Hb_145157_010 Hb_032208_080 Hb_032208_080 Hb_145157_010--Hb_032208_080 Hb_001369_760 Hb_001369_760 Hb_145157_010--Hb_001369_760 Hb_161207_010 Hb_161207_010 Hb_145157_010--Hb_161207_010 Hb_000754_050 Hb_000754_050 Hb_145157_010--Hb_000754_050 Hb_145157_010--Hb_004289_040 Hb_003124_210 Hb_003124_210 Hb_004289_040--Hb_003124_210 Hb_000545_120 Hb_000545_120 Hb_004289_040--Hb_000545_120 Hb_014440_010 Hb_014440_010 Hb_004289_040--Hb_014440_010 Hb_002811_340 Hb_002811_340 Hb_004289_040--Hb_002811_340 Hb_000139_150 Hb_000139_150 Hb_182831_010--Hb_000139_150 Hb_002602_020 Hb_002602_020 Hb_182831_010--Hb_002602_020 Hb_007276_020 Hb_007276_020 Hb_182831_010--Hb_007276_020 Hb_015026_080 Hb_015026_080 Hb_182831_010--Hb_015026_080 Hb_006054_050 Hb_006054_050 Hb_182831_010--Hb_006054_050 Hb_000057_050 Hb_000057_050 Hb_182831_010--Hb_000057_050 Hb_060411_010 Hb_060411_010 Hb_028751_020--Hb_060411_010 Hb_003057_010 Hb_003057_010 Hb_028751_020--Hb_003057_010 Hb_000631_070 Hb_000631_070 Hb_028751_020--Hb_000631_070 Hb_009898_020 Hb_009898_020 Hb_028751_020--Hb_009898_020 Hb_000236_450 Hb_000236_450 Hb_028751_020--Hb_000236_450 Hb_003813_160 Hb_003813_160 Hb_028751_020--Hb_003813_160 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_002123_030 Hb_002123_030 Hb_001496_140--Hb_002123_030 Hb_016834_010 Hb_016834_010 Hb_001496_140--Hb_016834_010 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_000038_050 Hb_000038_050 Hb_001496_140--Hb_000038_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0226812 0.0158755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0137374 0.0216208 0 0.0171457 0.0461722

CAGE analysis