Hb_003915_040

Information

Type transcription factor
Description TF Family: TRAF
Location Contig3915: 44082-45366
Sequence    

Annotation

kegg
ID pop:POPTR_0002s01110g
description POPTRDRAFT_829998; BTB/POZ domain-containing family protein
nr
ID XP_012073654.1
description PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
swissprot
ID Q8LEV3
description BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana GN=At2g30600/At2g30610 PE=2 SV=1
trembl
ID B9GQ11
description BTB/POZ domain-containing family protein OS=Populus trichocarpa GN=POPTR_0002s01110g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003915_040 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
2 Hb_000742_150 0.2454960299 - - -
3 Hb_032705_020 0.2727435744 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_000148_010 0.2731795377 - - -
5 Hb_007083_040 0.2751740881 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
6 Hb_004994_370 0.2842860014 - - -
7 Hb_145157_010 0.3128678775 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
8 Hb_006674_020 0.3262412889 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_085793_010 0.331507921 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
10 Hb_003205_040 0.3315118019 - - epoxide hydrolase, putative [Ricinus communis]
11 Hb_004550_070 0.33279787 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_000043_040 0.3337677399 - - CTV.19 [Citrus trifoliata]
13 Hb_011574_010 0.3342601166 - - -
14 Hb_033095_050 0.3361158602 - - hypothetical protein VITISV_038692 [Vitis vinifera]
15 Hb_012753_070 0.3386750395 - - hypothetical protein VITISV_033646 [Vitis vinifera]
16 Hb_032208_080 0.3420924531 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
17 Hb_066206_010 0.3436491346 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_005542_170 0.3442581745 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_001496_140 0.3451548615 - - -
20 Hb_025528_010 0.3456302911 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]

Gene co-expression network

sample Hb_003915_040 Hb_003915_040 Hb_000742_150 Hb_000742_150 Hb_003915_040--Hb_000742_150 Hb_032705_020 Hb_032705_020 Hb_003915_040--Hb_032705_020 Hb_000148_010 Hb_000148_010 Hb_003915_040--Hb_000148_010 Hb_007083_040 Hb_007083_040 Hb_003915_040--Hb_007083_040 Hb_004994_370 Hb_004994_370 Hb_003915_040--Hb_004994_370 Hb_145157_010 Hb_145157_010 Hb_003915_040--Hb_145157_010 Hb_132317_010 Hb_132317_010 Hb_000742_150--Hb_132317_010 Hb_000703_300 Hb_000703_300 Hb_000742_150--Hb_000703_300 Hb_007193_050 Hb_007193_050 Hb_000742_150--Hb_007193_050 Hb_000742_150--Hb_032705_020 Hb_070758_010 Hb_070758_010 Hb_000742_150--Hb_070758_010 Hb_032705_020--Hb_145157_010 Hb_004289_040 Hb_004289_040 Hb_032705_020--Hb_004289_040 Hb_182831_010 Hb_182831_010 Hb_032705_020--Hb_182831_010 Hb_028751_020 Hb_028751_020 Hb_032705_020--Hb_028751_020 Hb_001496_140 Hb_001496_140 Hb_032705_020--Hb_001496_140 Hb_033095_050 Hb_033095_050 Hb_000148_010--Hb_033095_050 Hb_005542_170 Hb_005542_170 Hb_000148_010--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_000148_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_000148_010--Hb_002249_200 Hb_002800_020 Hb_002800_020 Hb_000148_010--Hb_002800_020 Hb_005031_010 Hb_005031_010 Hb_000148_010--Hb_005031_010 Hb_028527_010 Hb_028527_010 Hb_007083_040--Hb_028527_010 Hb_001244_030 Hb_001244_030 Hb_007083_040--Hb_001244_030 Hb_007083_040--Hb_002249_200 Hb_007083_040--Hb_033095_050 Hb_007083_040--Hb_025528_010 Hb_007083_040--Hb_005542_170 Hb_004550_070 Hb_004550_070 Hb_004994_370--Hb_004550_070 Hb_003940_050 Hb_003940_050 Hb_004994_370--Hb_003940_050 Hb_000018_050 Hb_000018_050 Hb_004994_370--Hb_000018_050 Hb_001488_260 Hb_001488_260 Hb_004994_370--Hb_001488_260 Hb_000754_050 Hb_000754_050 Hb_004994_370--Hb_000754_050 Hb_032208_080 Hb_032208_080 Hb_145157_010--Hb_032208_080 Hb_001369_760 Hb_001369_760 Hb_145157_010--Hb_001369_760 Hb_161207_010 Hb_161207_010 Hb_145157_010--Hb_161207_010 Hb_145157_010--Hb_000754_050 Hb_145157_010--Hb_004289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0582582 0.0274817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0562322 0 0.0455924 0.224747

CAGE analysis