Hb_004550_070

Information

Type -
Description -
Location Contig4550: 112847-118098
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004550_070 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_004994_370 0.2765514345 - - -
3 Hb_003915_040 0.33279787 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
4 Hb_017604_030 0.3367453353 - - -
5 Hb_093824_010 0.353365547 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
6 Hb_016748_010 0.3757929621 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001773_010 0.3794934646 - - -
8 Hb_001818_110 0.3812877698 - - -
9 Hb_016734_030 0.3819084735 - - -
10 Hb_000752_080 0.3902521945 - - -
11 Hb_015978_050 0.3966961669 - - -
12 Hb_001488_260 0.3985362125 - - Alpha-2-macroglobulin [Gossypium arboreum]
13 Hb_001496_080 0.4017509924 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_006810_020 0.404345961 - - PREDICTED: NADPH:quinone oxidoreductase-like [Jatropha curcas]
15 Hb_000742_150 0.4046691568 - - -
16 Hb_007083_040 0.4063296175 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
17 Hb_000236_450 0.4063872626 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_011574_010 0.4079057405 - - -
19 Hb_002243_070 0.4101981782 - - sodium-bile acid cotransporter, putative [Ricinus communis]
20 Hb_032705_020 0.4128954558 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004550_070 Hb_004550_070 Hb_004994_370 Hb_004994_370 Hb_004550_070--Hb_004994_370 Hb_003915_040 Hb_003915_040 Hb_004550_070--Hb_003915_040 Hb_017604_030 Hb_017604_030 Hb_004550_070--Hb_017604_030 Hb_093824_010 Hb_093824_010 Hb_004550_070--Hb_093824_010 Hb_016748_010 Hb_016748_010 Hb_004550_070--Hb_016748_010 Hb_001773_010 Hb_001773_010 Hb_004550_070--Hb_001773_010 Hb_004994_370--Hb_003915_040 Hb_003940_050 Hb_003940_050 Hb_004994_370--Hb_003940_050 Hb_000018_050 Hb_000018_050 Hb_004994_370--Hb_000018_050 Hb_001488_260 Hb_001488_260 Hb_004994_370--Hb_001488_260 Hb_000754_050 Hb_000754_050 Hb_004994_370--Hb_000754_050 Hb_000742_150 Hb_000742_150 Hb_003915_040--Hb_000742_150 Hb_032705_020 Hb_032705_020 Hb_003915_040--Hb_032705_020 Hb_000148_010 Hb_000148_010 Hb_003915_040--Hb_000148_010 Hb_007083_040 Hb_007083_040 Hb_003915_040--Hb_007083_040 Hb_145157_010 Hb_145157_010 Hb_003915_040--Hb_145157_010 Hb_000752_080 Hb_000752_080 Hb_017604_030--Hb_000752_080 Hb_031866_030 Hb_031866_030 Hb_017604_030--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_017604_030--Hb_002060_040 Hb_009152_030 Hb_009152_030 Hb_017604_030--Hb_009152_030 Hb_033066_030 Hb_033066_030 Hb_017604_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_017604_030--Hb_000009_010 Hb_000094_050 Hb_000094_050 Hb_093824_010--Hb_000094_050 Hb_016734_030 Hb_016734_030 Hb_093824_010--Hb_016734_030 Hb_003645_050 Hb_003645_050 Hb_093824_010--Hb_003645_050 Hb_000495_060 Hb_000495_060 Hb_093824_010--Hb_000495_060 Hb_001871_030 Hb_001871_030 Hb_093824_010--Hb_001871_030 Hb_006717_080 Hb_006717_080 Hb_093824_010--Hb_006717_080 Hb_016748_010--Hb_016734_030 Hb_008326_010 Hb_008326_010 Hb_016748_010--Hb_008326_010 Hb_000120_040 Hb_000120_040 Hb_016748_010--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_016748_010--Hb_006420_050 Hb_000111_110 Hb_000111_110 Hb_016748_010--Hb_000111_110 Hb_000122_210 Hb_000122_210 Hb_016748_010--Hb_000122_210 Hb_010775_050 Hb_010775_050 Hb_001773_010--Hb_010775_050 Hb_000078_170 Hb_000078_170 Hb_001773_010--Hb_000078_170 Hb_005451_020 Hb_005451_020 Hb_001773_010--Hb_005451_020 Hb_001965_020 Hb_001965_020 Hb_001773_010--Hb_001965_020 Hb_002637_020 Hb_002637_020 Hb_001773_010--Hb_002637_020 Hb_000330_080 Hb_000330_080 Hb_001773_010--Hb_000330_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00528011 0 0 0 0.00827529 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00761705 0 0.00603119 0.0163455

CAGE analysis