Hb_000018_050

Information

Type -
Description -
Location Contig18: 62514-67633
Sequence    

Annotation

kegg
ID bvg:104899363
description uncharacterized LOC104899363
nr
ID XP_010684842.1
description PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A0D3A328
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_050 0.0 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
2 Hb_037790_010 0.2174980537 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_007904_010 0.2495321926 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
4 Hb_005822_030 0.2827301502 - - -
5 Hb_006212_030 0.2854052426 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_002374_130 0.2914106502 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
7 Hb_019617_010 0.3077347953 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002860_020 0.307835009 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_002870_050 0.318877487 - - -
10 Hb_175748_010 0.3198292268 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_004994_370 0.3259448818 - - -
12 Hb_028487_090 0.3268244285 - - -
13 Hb_003605_010 0.3340834511 - - -
14 Hb_173121_010 0.342731815 - - -
15 Hb_000347_050 0.34658861 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
16 Hb_155720_010 0.3469926804 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
17 Hb_002253_090 0.3532278394 - - Chitinase 1 precursor, putative [Ricinus communis]
18 Hb_000709_020 0.3546928705 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_163663_010 0.3578924023 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
20 Hb_004018_010 0.3689114583 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]

Gene co-expression network

sample Hb_000018_050 Hb_000018_050 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_007904_010 Hb_007904_010 Hb_000018_050--Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_000018_050--Hb_005822_030 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_019617_010 Hb_019617_010 Hb_000018_050--Hb_019617_010 Hb_002860_020 Hb_002860_020 Hb_037790_010--Hb_002860_020 Hb_000101_280 Hb_000101_280 Hb_037790_010--Hb_000101_280 Hb_163663_010 Hb_163663_010 Hb_037790_010--Hb_163663_010 Hb_087426_010 Hb_087426_010 Hb_037790_010--Hb_087426_010 Hb_000709_020 Hb_000709_020 Hb_037790_010--Hb_000709_020 Hb_007904_010--Hb_005822_030 Hb_085438_010 Hb_085438_010 Hb_007904_010--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_007904_010--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_007904_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_007904_010--Hb_000676_210 Hb_005822_030--Hb_019617_010 Hb_032634_010 Hb_032634_010 Hb_005822_030--Hb_032634_010 Hb_079902_030 Hb_079902_030 Hb_005822_030--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_005822_030--Hb_002042_240 Hb_003020_290 Hb_003020_290 Hb_006212_030--Hb_003020_290 Hb_012938_010 Hb_012938_010 Hb_006212_030--Hb_012938_010 Hb_005654_010 Hb_005654_010 Hb_006212_030--Hb_005654_010 Hb_000545_120 Hb_000545_120 Hb_006212_030--Hb_000545_120 Hb_000387_090 Hb_000387_090 Hb_006212_030--Hb_000387_090 Hb_002870_050 Hb_002870_050 Hb_002374_130--Hb_002870_050 Hb_028487_090 Hb_028487_090 Hb_002374_130--Hb_028487_090 Hb_175748_010 Hb_175748_010 Hb_002374_130--Hb_175748_010 Hb_002374_130--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_002374_130--Hb_003207_140 Hb_002374_130--Hb_004730_030 Hb_155720_010 Hb_155720_010 Hb_019617_010--Hb_155720_010 Hb_019617_010--Hb_032634_010 Hb_003605_010 Hb_003605_010 Hb_019617_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_019617_010--Hb_173121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00561687 0 0 0 0 0.0041356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00810269 0 0 0.0173748

CAGE analysis