Hb_087426_010

Information

Type -
Description -
Location Contig87426: 2284-3012
Sequence    

Annotation

kegg
ID atr:s00876p00007370
description AMTR_s00876p00007370; hypothetical protein
nr
ID XP_012490930.1
description PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087426_010 0.0 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
2 Hb_056550_010 0.0935500063 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
3 Hb_000351_150 0.1056045046 - - Wall-associated kinase 2, putative [Theobroma cacao]
4 Hb_000709_020 0.1223749122 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_163663_010 0.1453439323 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
6 Hb_004018_010 0.1563422412 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
7 Hb_000101_280 0.2022691533 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
8 Hb_075722_010 0.2528086093 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
9 Hb_037790_010 0.3003352325 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
10 Hb_002042_240 0.3094626564 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_002850_030 0.3099711277 - - -
12 Hb_079902_030 0.3114567471 - - conserved hypothetical protein [Ricinus communis]
13 Hb_016354_010 0.3144223324 - - -
14 Hb_012235_010 0.3222200839 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_002652_010 0.3251264299 - - -
16 Hb_000140_430 0.3287567625 - - -
17 Hb_000085_030 0.3289123278 - - -
18 Hb_001160_010 0.3320230224 - - -
19 Hb_012807_090 0.3348160697 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
20 Hb_004951_050 0.3376844626 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_087426_010 Hb_087426_010 Hb_056550_010 Hb_056550_010 Hb_087426_010--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_087426_010--Hb_000351_150 Hb_000709_020 Hb_000709_020 Hb_087426_010--Hb_000709_020 Hb_163663_010 Hb_163663_010 Hb_087426_010--Hb_163663_010 Hb_004018_010 Hb_004018_010 Hb_087426_010--Hb_004018_010 Hb_000101_280 Hb_000101_280 Hb_087426_010--Hb_000101_280 Hb_056550_010--Hb_000351_150 Hb_056550_010--Hb_004018_010 Hb_056550_010--Hb_000709_020 Hb_075722_010 Hb_075722_010 Hb_056550_010--Hb_075722_010 Hb_056550_010--Hb_163663_010 Hb_000351_150--Hb_004018_010 Hb_000351_150--Hb_000709_020 Hb_000351_150--Hb_075722_010 Hb_000351_150--Hb_163663_010 Hb_000709_020--Hb_163663_010 Hb_000709_020--Hb_004018_010 Hb_000709_020--Hb_000101_280 Hb_163663_010--Hb_004018_010 Hb_163663_010--Hb_000101_280 Hb_012807_090 Hb_012807_090 Hb_004018_010--Hb_012807_090 Hb_037790_010 Hb_037790_010 Hb_000101_280--Hb_037790_010 Hb_001160_010 Hb_001160_010 Hb_000101_280--Hb_001160_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749452 0 0 0 0 0.0423327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.119521

CAGE analysis