Hb_012807_090

Information

Type -
Description -
Location Contig12807: 83575-83940
Sequence    

Annotation

kegg
ID vvi:100267173
description uncharacterized LOC100267173
nr
ID XP_002273631.1
description PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID F6GWA1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_090 0.0 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
2 Hb_004951_050 0.0077481652 - - conserved hypothetical protein [Ricinus communis]
3 Hb_014929_010 0.011525528 - - -
4 Hb_000143_070 0.019778794 - - -
5 Hb_000300_460 0.026482027 - - Mavicyanin, putative [Ricinus communis]
6 Hb_003279_010 0.0297044397 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_121954_010 0.0299747306 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
8 Hb_074822_010 0.030051997 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
9 Hb_005379_010 0.0318212405 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_000646_030 0.0323526453 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_025662_020 0.0323857929 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003797_030 0.0325224322 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000329_460 0.0684847444 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
14 Hb_000248_040 0.0920717186 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_002850_030 0.1146991886 - - -
16 Hb_002042_240 0.1412769039 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_002149_030 0.1564333462 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
18 Hb_079902_030 0.1717999897 - - conserved hypothetical protein [Ricinus communis]
19 Hb_016354_010 0.1928413893 - - -
20 Hb_004018_010 0.2032809035 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]

Gene co-expression network

sample Hb_012807_090 Hb_012807_090 Hb_004951_050 Hb_004951_050 Hb_012807_090--Hb_004951_050 Hb_014929_010 Hb_014929_010 Hb_012807_090--Hb_014929_010 Hb_000143_070 Hb_000143_070 Hb_012807_090--Hb_000143_070 Hb_000300_460 Hb_000300_460 Hb_012807_090--Hb_000300_460 Hb_003279_010 Hb_003279_010 Hb_012807_090--Hb_003279_010 Hb_121954_010 Hb_121954_010 Hb_012807_090--Hb_121954_010 Hb_004951_050--Hb_014929_010 Hb_004951_050--Hb_000143_070 Hb_004951_050--Hb_000300_460 Hb_004951_050--Hb_003279_010 Hb_004951_050--Hb_121954_010 Hb_014929_010--Hb_000143_070 Hb_014929_010--Hb_000300_460 Hb_014929_010--Hb_003279_010 Hb_014929_010--Hb_121954_010 Hb_000143_070--Hb_000300_460 Hb_000143_070--Hb_003279_010 Hb_000143_070--Hb_121954_010 Hb_074822_010 Hb_074822_010 Hb_000143_070--Hb_074822_010 Hb_000300_460--Hb_003279_010 Hb_000300_460--Hb_121954_010 Hb_000300_460--Hb_074822_010 Hb_005379_010 Hb_005379_010 Hb_000300_460--Hb_005379_010 Hb_000646_030 Hb_000646_030 Hb_000300_460--Hb_000646_030 Hb_025662_020 Hb_025662_020 Hb_000300_460--Hb_025662_020 Hb_003279_010--Hb_121954_010 Hb_003279_010--Hb_074822_010 Hb_003279_010--Hb_005379_010 Hb_003279_010--Hb_000646_030 Hb_003279_010--Hb_025662_020 Hb_003797_030 Hb_003797_030 Hb_003279_010--Hb_003797_030 Hb_121954_010--Hb_074822_010 Hb_121954_010--Hb_005379_010 Hb_121954_010--Hb_000646_030 Hb_121954_010--Hb_025662_020 Hb_121954_010--Hb_003797_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0999185 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.317872

CAGE analysis