Hb_000143_070

Information

Type -
Description -
Location Contig143: 134954-136145
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000143_070 0.0 - - -
2 Hb_000300_460 0.0067055187 - - Mavicyanin, putative [Ricinus communis]
3 Hb_014929_010 0.008254462 - - -
4 Hb_003279_010 0.0099294619 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
5 Hb_121954_010 0.0101998941 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
6 Hb_074822_010 0.0102772012 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
7 Hb_004951_050 0.0120317938 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005379_010 0.0120474234 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000646_030 0.0125791391 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_025662_020 0.0126123064 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_003797_030 0.012749027 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_012807_090 0.019778794 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
13 Hb_000329_460 0.0487519633 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
14 Hb_000248_040 0.0723884846 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_002850_030 0.134316838 - - -
16 Hb_002149_030 0.1369984077 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
17 Hb_002042_240 0.1608262173 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_079902_030 0.1912594606 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004018_010 0.2082499539 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
20 Hb_016354_010 0.2122324561 - - -

Gene co-expression network

sample Hb_000143_070 Hb_000143_070 Hb_000300_460 Hb_000300_460 Hb_000143_070--Hb_000300_460 Hb_014929_010 Hb_014929_010 Hb_000143_070--Hb_014929_010 Hb_003279_010 Hb_003279_010 Hb_000143_070--Hb_003279_010 Hb_121954_010 Hb_121954_010 Hb_000143_070--Hb_121954_010 Hb_074822_010 Hb_074822_010 Hb_000143_070--Hb_074822_010 Hb_004951_050 Hb_004951_050 Hb_000143_070--Hb_004951_050 Hb_000300_460--Hb_003279_010 Hb_000300_460--Hb_121954_010 Hb_000300_460--Hb_074822_010 Hb_005379_010 Hb_005379_010 Hb_000300_460--Hb_005379_010 Hb_000646_030 Hb_000646_030 Hb_000300_460--Hb_000646_030 Hb_025662_020 Hb_025662_020 Hb_000300_460--Hb_025662_020 Hb_014929_010--Hb_004951_050 Hb_012807_090 Hb_012807_090 Hb_014929_010--Hb_012807_090 Hb_014929_010--Hb_000300_460 Hb_014929_010--Hb_003279_010 Hb_014929_010--Hb_121954_010 Hb_003279_010--Hb_121954_010 Hb_003279_010--Hb_074822_010 Hb_003279_010--Hb_005379_010 Hb_003279_010--Hb_000646_030 Hb_003279_010--Hb_025662_020 Hb_003797_030 Hb_003797_030 Hb_003279_010--Hb_003797_030 Hb_121954_010--Hb_074822_010 Hb_121954_010--Hb_005379_010 Hb_121954_010--Hb_000646_030 Hb_121954_010--Hb_025662_020 Hb_121954_010--Hb_003797_030 Hb_074822_010--Hb_005379_010 Hb_074822_010--Hb_000646_030 Hb_074822_010--Hb_025662_020 Hb_074822_010--Hb_003797_030 Hb_004951_050--Hb_012807_090 Hb_004951_050--Hb_000300_460 Hb_004951_050--Hb_003279_010 Hb_004951_050--Hb_121954_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0401922 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.142849

CAGE analysis