Hb_163663_010

Information

Type -
Description -
Location Contig163663: 35-1313
Sequence    

Annotation

kegg
ID vvi:100854167
description uncharacterized LOC100854167
nr
ID XP_012066983.1
description PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5C021
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017696 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163663_010 0.0 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
2 Hb_000709_020 0.0517028527 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_087426_010 0.1453439323 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
4 Hb_004018_010 0.1577383937 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
5 Hb_000101_280 0.1604119585 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
6 Hb_056550_010 0.2264741193 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
7 Hb_000351_150 0.2366366804 - - Wall-associated kinase 2, putative [Theobroma cacao]
8 Hb_037790_010 0.2843788013 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_001160_010 0.300317492 - - -
10 Hb_028105_020 0.3037820227 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_162933_010 0.3037834098 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
12 Hb_003463_040 0.3037994606 - - -
13 Hb_003694_070 0.3038750879 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
14 Hb_017279_030 0.3039761067 - - -
15 Hb_007111_020 0.3039988566 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
16 Hb_013874_010 0.3041049177 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
17 Hb_024128_010 0.3041117892 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_139518_020 0.3042100151 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_011114_050 0.3042306894 - - -
20 Hb_002417_040 0.3042652793 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_163663_010 Hb_163663_010 Hb_000709_020 Hb_000709_020 Hb_163663_010--Hb_000709_020 Hb_087426_010 Hb_087426_010 Hb_163663_010--Hb_087426_010 Hb_004018_010 Hb_004018_010 Hb_163663_010--Hb_004018_010 Hb_000101_280 Hb_000101_280 Hb_163663_010--Hb_000101_280 Hb_056550_010 Hb_056550_010 Hb_163663_010--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_163663_010--Hb_000351_150 Hb_000709_020--Hb_004018_010 Hb_000709_020--Hb_087426_010 Hb_000709_020--Hb_056550_010 Hb_000709_020--Hb_000351_150 Hb_000709_020--Hb_000101_280 Hb_087426_010--Hb_056550_010 Hb_087426_010--Hb_000351_150 Hb_087426_010--Hb_004018_010 Hb_087426_010--Hb_000101_280 Hb_004018_010--Hb_056550_010 Hb_004018_010--Hb_000351_150 Hb_012807_090 Hb_012807_090 Hb_004018_010--Hb_012807_090 Hb_037790_010 Hb_037790_010 Hb_000101_280--Hb_037790_010 Hb_001160_010 Hb_001160_010 Hb_000101_280--Hb_001160_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010 Hb_056550_010--Hb_000351_150 Hb_075722_010 Hb_075722_010 Hb_056550_010--Hb_075722_010 Hb_000351_150--Hb_075722_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0218312 0 0 0 0 0.0240331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0804985

CAGE analysis