Hb_001160_010

Information

Type -
Description -
Location Contig1160: 513-2087
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_010 0.0 - - -
2 Hb_005451_020 0.2145584145 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
3 Hb_005356_060 0.2446124809 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
4 Hb_000101_280 0.2533983782 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
5 Hb_000140_430 0.2623233859 - - -
6 Hb_153142_010 0.2814686524 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
7 Hb_021068_010 0.2957166986 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
8 Hb_188319_010 0.2981215988 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
9 Hb_163663_010 0.300317492 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
10 Hb_062741_010 0.3025953292 - - -
11 Hb_001031_050 0.3048377438 - - -
12 Hb_000085_030 0.3085456378 - - -
13 Hb_005241_020 0.309324533 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
14 Hb_001965_020 0.3113227609 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
15 Hb_114010_020 0.3186009141 - - -
16 Hb_000709_020 0.3252282695 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_087426_010 0.3320230224 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
18 Hb_004195_260 0.3327341168 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
19 Hb_006674_020 0.3418216398 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_037790_010 0.3447212616 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]

Gene co-expression network

sample Hb_001160_010 Hb_001160_010 Hb_005451_020 Hb_005451_020 Hb_001160_010--Hb_005451_020 Hb_005356_060 Hb_005356_060 Hb_001160_010--Hb_005356_060 Hb_000101_280 Hb_000101_280 Hb_001160_010--Hb_000101_280 Hb_000140_430 Hb_000140_430 Hb_001160_010--Hb_000140_430 Hb_153142_010 Hb_153142_010 Hb_001160_010--Hb_153142_010 Hb_021068_010 Hb_021068_010 Hb_001160_010--Hb_021068_010 Hb_010775_050 Hb_010775_050 Hb_005451_020--Hb_010775_050 Hb_004195_260 Hb_004195_260 Hb_005451_020--Hb_004195_260 Hb_001773_010 Hb_001773_010 Hb_005451_020--Hb_001773_010 Hb_002249_210 Hb_002249_210 Hb_005451_020--Hb_002249_210 Hb_005451_020--Hb_021068_010 Hb_005356_060--Hb_021068_010 Hb_004361_020 Hb_004361_020 Hb_005356_060--Hb_004361_020 Hb_003209_160 Hb_003209_160 Hb_005356_060--Hb_003209_160 Hb_001019_120 Hb_001019_120 Hb_005356_060--Hb_001019_120 Hb_005356_060--Hb_000101_280 Hb_163663_010 Hb_163663_010 Hb_000101_280--Hb_163663_010 Hb_000709_020 Hb_000709_020 Hb_000101_280--Hb_000709_020 Hb_087426_010 Hb_087426_010 Hb_000101_280--Hb_087426_010 Hb_037790_010 Hb_037790_010 Hb_000101_280--Hb_037790_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010 Hb_000085_030 Hb_000085_030 Hb_000140_430--Hb_000085_030 Hb_002637_020 Hb_002637_020 Hb_000140_430--Hb_002637_020 Hb_012184_030 Hb_012184_030 Hb_000140_430--Hb_012184_030 Hb_000671_140 Hb_000671_140 Hb_000140_430--Hb_000671_140 Hb_000140_430--Hb_005451_020 Hb_188319_010 Hb_188319_010 Hb_153142_010--Hb_188319_010 Hb_114010_020 Hb_114010_020 Hb_153142_010--Hb_114010_020 Hb_000402_140 Hb_000402_140 Hb_153142_010--Hb_000402_140 Hb_153142_010--Hb_004195_260 Hb_006674_020 Hb_006674_020 Hb_153142_010--Hb_006674_020 Hb_005140_010 Hb_005140_010 Hb_153142_010--Hb_005140_010 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_183574_010 Hb_183574_010 Hb_021068_010--Hb_183574_010 Hb_009973_020 Hb_009973_020 Hb_021068_010--Hb_009973_020 Hb_021068_010--Hb_004361_020 Hb_001709_130 Hb_001709_130 Hb_021068_010--Hb_001709_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0338494 0 0 0 0.0340164 0.0900162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.121824

CAGE analysis