Hb_004195_260

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4195: 200375-201875
Sequence    

Annotation

kegg
ID rcu:RCOM_1797940
description Disease resistance protein RPH8A, putative (EC:3.1.3.16)
nr
ID XP_002535012.1
description Disease resistance protein RPH8A, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T9U3
description Disease resistance protein RPH8A, putative (Fragment) OS=Ricinus communis GN=RCOM_1797940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_260 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
2 Hb_188319_010 0.1856800616 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
3 Hb_153142_010 0.1899332453 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
4 Hb_114010_020 0.1932902829 - - -
5 Hb_062741_010 0.2195961726 - - -
6 Hb_005451_020 0.2582711034 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
7 Hb_006674_020 0.2937798507 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_010775_050 0.300772504 - - -
9 Hb_005140_010 0.3122228601 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_000402_140 0.3184485689 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001160_010 0.3327341168 - - -
12 Hb_012404_010 0.3420399877 - - -
13 Hb_031691_010 0.3455908618 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_027890_010 0.3465058718 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
15 Hb_186440_010 0.3569482489 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_001031_050 0.3679632896 - - -
17 Hb_030627_050 0.3703169255 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
18 Hb_006911_030 0.3704593908 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
19 Hb_011574_010 0.3742907859 - - -
20 Hb_183574_010 0.3844861578 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_004195_260 Hb_004195_260 Hb_188319_010 Hb_188319_010 Hb_004195_260--Hb_188319_010 Hb_153142_010 Hb_153142_010 Hb_004195_260--Hb_153142_010 Hb_114010_020 Hb_114010_020 Hb_004195_260--Hb_114010_020 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_005451_020 Hb_005451_020 Hb_004195_260--Hb_005451_020 Hb_006674_020 Hb_006674_020 Hb_004195_260--Hb_006674_020 Hb_188319_010--Hb_153142_010 Hb_188319_010--Hb_114010_020 Hb_000402_140 Hb_000402_140 Hb_188319_010--Hb_000402_140 Hb_188319_010--Hb_006674_020 Hb_005140_010 Hb_005140_010 Hb_188319_010--Hb_005140_010 Hb_153142_010--Hb_114010_020 Hb_153142_010--Hb_000402_140 Hb_153142_010--Hb_006674_020 Hb_153142_010--Hb_005140_010 Hb_114010_020--Hb_000402_140 Hb_114010_020--Hb_005140_010 Hb_114010_020--Hb_006674_020 Hb_005241_020 Hb_005241_020 Hb_062741_010--Hb_005241_020 Hb_062741_010--Hb_153142_010 Hb_062741_010--Hb_188319_010 Hb_183574_010 Hb_183574_010 Hb_062741_010--Hb_183574_010 Hb_001160_010 Hb_001160_010 Hb_062741_010--Hb_001160_010 Hb_005451_020--Hb_001160_010 Hb_010775_050 Hb_010775_050 Hb_005451_020--Hb_010775_050 Hb_001773_010 Hb_001773_010 Hb_005451_020--Hb_001773_010 Hb_002249_210 Hb_002249_210 Hb_005451_020--Hb_002249_210 Hb_021068_010 Hb_021068_010 Hb_005451_020--Hb_021068_010 Hb_001031_050 Hb_001031_050 Hb_006674_020--Hb_001031_050 Hb_153665_010 Hb_153665_010 Hb_006674_020--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_006674_020--Hb_000599_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0494259 0.0295165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0625976

CAGE analysis