Hb_188319_010

Information

Type -
Description -
Location Contig188319: 23-985
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023432mg
description hypothetical protein
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5WQG1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188319_010 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_153142_010 0.036017434 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
3 Hb_114010_020 0.0373385771 - - -
4 Hb_000402_140 0.154538535 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004195_260 0.1856800616 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
6 Hb_006674_020 0.2365625973 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005140_010 0.2398707149 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_161017_020 0.272290205 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
9 Hb_062741_010 0.2908494444 - - -
10 Hb_001160_010 0.2981215988 - - -
11 Hb_028105_020 0.3040176233 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
12 Hb_162933_010 0.3040312271 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_003463_040 0.3040723633 - - -
14 Hb_017279_030 0.3040963409 - - -
15 Hb_013874_010 0.3041911209 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
16 Hb_003694_070 0.3041939638 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
17 Hb_011114_050 0.3042898288 - - -
18 Hb_007111_020 0.3043603503 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_003401_040 0.3044838717 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
20 Hb_024128_010 0.3045020547 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]

Gene co-expression network

sample Hb_188319_010 Hb_188319_010 Hb_153142_010 Hb_153142_010 Hb_188319_010--Hb_153142_010 Hb_114010_020 Hb_114010_020 Hb_188319_010--Hb_114010_020 Hb_000402_140 Hb_000402_140 Hb_188319_010--Hb_000402_140 Hb_004195_260 Hb_004195_260 Hb_188319_010--Hb_004195_260 Hb_006674_020 Hb_006674_020 Hb_188319_010--Hb_006674_020 Hb_005140_010 Hb_005140_010 Hb_188319_010--Hb_005140_010 Hb_153142_010--Hb_114010_020 Hb_153142_010--Hb_000402_140 Hb_153142_010--Hb_004195_260 Hb_153142_010--Hb_006674_020 Hb_153142_010--Hb_005140_010 Hb_114010_020--Hb_000402_140 Hb_114010_020--Hb_004195_260 Hb_114010_020--Hb_005140_010 Hb_114010_020--Hb_006674_020 Hb_161017_020 Hb_161017_020 Hb_000402_140--Hb_161017_020 Hb_006778_010 Hb_006778_010 Hb_000402_140--Hb_006778_010 Hb_012330_030 Hb_012330_030 Hb_000402_140--Hb_012330_030 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_005451_020 Hb_005451_020 Hb_004195_260--Hb_005451_020 Hb_004195_260--Hb_006674_020 Hb_001031_050 Hb_001031_050 Hb_006674_020--Hb_001031_050 Hb_153665_010 Hb_153665_010 Hb_006674_020--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_006674_020--Hb_000599_070 Hb_005140_010--Hb_000402_140 Hb_068031_010 Hb_068031_010 Hb_005140_010--Hb_068031_010 Hb_005140_010--Hb_004195_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0232572 0.0259424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0852352

CAGE analysis