Hb_114010_020

Information

Type -
Description -
Location Contig114010: 8222-11318
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114010_020 0.0 - - -
2 Hb_188319_010 0.0373385771 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
3 Hb_153142_010 0.0731032833 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
4 Hb_000402_140 0.1315020247 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004195_260 0.1932902829 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
6 Hb_005140_010 0.2374586087 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_006674_020 0.2501350617 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_161017_020 0.2548062362 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
9 Hb_097889_010 0.2911166173 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
10 Hb_011537_090 0.2911211883 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
11 Hb_009188_010 0.2911609562 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_008976_010 0.2911887223 - - -
13 Hb_000710_120 0.2911975834 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
14 Hb_001309_030 0.2912036651 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004019_100 0.2912070099 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
16 Hb_001972_020 0.2912262451 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_001817_190 0.2912307908 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_010783_010 0.2912337984 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_124540_020 0.2914221087 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_090778_010 0.2914759494 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]

Gene co-expression network

sample Hb_114010_020 Hb_114010_020 Hb_188319_010 Hb_188319_010 Hb_114010_020--Hb_188319_010 Hb_153142_010 Hb_153142_010 Hb_114010_020--Hb_153142_010 Hb_000402_140 Hb_000402_140 Hb_114010_020--Hb_000402_140 Hb_004195_260 Hb_004195_260 Hb_114010_020--Hb_004195_260 Hb_005140_010 Hb_005140_010 Hb_114010_020--Hb_005140_010 Hb_006674_020 Hb_006674_020 Hb_114010_020--Hb_006674_020 Hb_188319_010--Hb_153142_010 Hb_188319_010--Hb_000402_140 Hb_188319_010--Hb_004195_260 Hb_188319_010--Hb_006674_020 Hb_188319_010--Hb_005140_010 Hb_153142_010--Hb_000402_140 Hb_153142_010--Hb_004195_260 Hb_153142_010--Hb_006674_020 Hb_153142_010--Hb_005140_010 Hb_161017_020 Hb_161017_020 Hb_000402_140--Hb_161017_020 Hb_006778_010 Hb_006778_010 Hb_000402_140--Hb_006778_010 Hb_012330_030 Hb_012330_030 Hb_000402_140--Hb_012330_030 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_005451_020 Hb_005451_020 Hb_004195_260--Hb_005451_020 Hb_004195_260--Hb_006674_020 Hb_005140_010--Hb_000402_140 Hb_068031_010 Hb_068031_010 Hb_005140_010--Hb_068031_010 Hb_005140_010--Hb_004195_260 Hb_001031_050 Hb_001031_050 Hb_006674_020--Hb_001031_050 Hb_153665_010 Hb_153665_010 Hb_006674_020--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_006674_020--Hb_000599_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0270253 0.023774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0982421

CAGE analysis