Hb_000402_140

Information

Type -
Description -
Location Contig402: 143037-150362
Sequence    

Annotation

kegg
ID rcu:RCOM_0024500
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002527912.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID B9SPJ3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0024500 PE=3 SV=1
Gene Ontology
ID GO:0005622
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_140 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_114010_020 0.1315020247 - - -
3 Hb_188319_010 0.154538535 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_161017_020 0.1767371865 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
5 Hb_153142_010 0.1776703126 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
6 Hb_006778_010 0.2202302503 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
7 Hb_012330_030 0.2291810866 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000764_050 0.2399789083 - - hypothetical protein JCGZ_09935 [Jatropha curcas]
9 Hb_026532_010 0.244993245 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
10 Hb_001662_020 0.245791589 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
11 Hb_011616_060 0.2458290623 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
12 Hb_090778_010 0.2459156491 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
13 Hb_124540_020 0.2463618349 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_010783_010 0.248423379 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001817_190 0.2484676183 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_001972_020 0.2485356732 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_004019_100 0.2488417045 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
18 Hb_001309_030 0.2488983338 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000710_120 0.249004321 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
20 Hb_008976_010 0.2491665487 - - -

Gene co-expression network

sample Hb_000402_140 Hb_000402_140 Hb_114010_020 Hb_114010_020 Hb_000402_140--Hb_114010_020 Hb_188319_010 Hb_188319_010 Hb_000402_140--Hb_188319_010 Hb_161017_020 Hb_161017_020 Hb_000402_140--Hb_161017_020 Hb_153142_010 Hb_153142_010 Hb_000402_140--Hb_153142_010 Hb_006778_010 Hb_006778_010 Hb_000402_140--Hb_006778_010 Hb_012330_030 Hb_012330_030 Hb_000402_140--Hb_012330_030 Hb_114010_020--Hb_188319_010 Hb_114010_020--Hb_153142_010 Hb_004195_260 Hb_004195_260 Hb_114010_020--Hb_004195_260 Hb_005140_010 Hb_005140_010 Hb_114010_020--Hb_005140_010 Hb_006674_020 Hb_006674_020 Hb_114010_020--Hb_006674_020 Hb_188319_010--Hb_153142_010 Hb_188319_010--Hb_004195_260 Hb_188319_010--Hb_006674_020 Hb_188319_010--Hb_005140_010 Hb_001645_020 Hb_001645_020 Hb_161017_020--Hb_001645_020 Hb_001902_170 Hb_001902_170 Hb_161017_020--Hb_001902_170 Hb_000627_200 Hb_000627_200 Hb_161017_020--Hb_000627_200 Hb_182972_020 Hb_182972_020 Hb_161017_020--Hb_182972_020 Hb_179142_010 Hb_179142_010 Hb_161017_020--Hb_179142_010 Hb_153142_010--Hb_004195_260 Hb_153142_010--Hb_006674_020 Hb_153142_010--Hb_005140_010 Hb_027522_020 Hb_027522_020 Hb_006778_010--Hb_027522_020 Hb_000585_090 Hb_000585_090 Hb_006778_010--Hb_000585_090 Hb_164415_010 Hb_164415_010 Hb_006778_010--Hb_164415_010 Hb_003915_030 Hb_003915_030 Hb_006778_010--Hb_003915_030 Hb_004987_050 Hb_004987_050 Hb_006778_010--Hb_004987_050 Hb_000764_050 Hb_000764_050 Hb_006778_010--Hb_000764_050 Hb_012330_030--Hb_000764_050 Hb_012330_030--Hb_000585_090 Hb_026532_010 Hb_026532_010 Hb_012330_030--Hb_026532_010 Hb_001662_020 Hb_001662_020 Hb_012330_030--Hb_001662_020 Hb_011616_060 Hb_011616_060 Hb_012330_030--Hb_011616_060 Hb_090778_010 Hb_090778_010 Hb_012330_030--Hb_090778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00790267 0.00743158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0599201

CAGE analysis