Hb_005140_010

Information

Type -
Description -
Location Contig5140: 22988-27450
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005140_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_114010_020 0.2374586087 - - -
3 Hb_188319_010 0.2398707149 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_153142_010 0.2468328561 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
5 Hb_000402_140 0.2631642423 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_068031_010 0.2840732726 - - hypothetical protein VITISV_034229 [Vitis vinifera]
7 Hb_004195_260 0.3122228601 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
8 Hb_011574_010 0.3126615807 - - -
9 Hb_003752_040 0.3129483175 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
10 Hb_001031_050 0.3138180054 - - -
11 Hb_000690_170 0.3174976666 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005656_150 0.3244653122 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
13 Hb_145745_020 0.3281434849 - - Cell wall-associated hydrolase, partial [Medicago truncatula]
14 Hb_012305_110 0.3291834421 - - PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
15 Hb_011649_040 0.3294018697 - - hypothetical protein CISIN_1g039733mg [Citrus sinensis]
16 Hb_095399_010 0.3346368398 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
17 Hb_161017_020 0.3351610834 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
18 Hb_002249_210 0.3358776847 - - -
19 Hb_006674_020 0.3372010278 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_032208_080 0.3382822481 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_005140_010 Hb_005140_010 Hb_114010_020 Hb_114010_020 Hb_005140_010--Hb_114010_020 Hb_188319_010 Hb_188319_010 Hb_005140_010--Hb_188319_010 Hb_153142_010 Hb_153142_010 Hb_005140_010--Hb_153142_010 Hb_000402_140 Hb_000402_140 Hb_005140_010--Hb_000402_140 Hb_068031_010 Hb_068031_010 Hb_005140_010--Hb_068031_010 Hb_004195_260 Hb_004195_260 Hb_005140_010--Hb_004195_260 Hb_114010_020--Hb_188319_010 Hb_114010_020--Hb_153142_010 Hb_114010_020--Hb_000402_140 Hb_114010_020--Hb_004195_260 Hb_006674_020 Hb_006674_020 Hb_114010_020--Hb_006674_020 Hb_188319_010--Hb_153142_010 Hb_188319_010--Hb_000402_140 Hb_188319_010--Hb_004195_260 Hb_188319_010--Hb_006674_020 Hb_153142_010--Hb_000402_140 Hb_153142_010--Hb_004195_260 Hb_153142_010--Hb_006674_020 Hb_161017_020 Hb_161017_020 Hb_000402_140--Hb_161017_020 Hb_006778_010 Hb_006778_010 Hb_000402_140--Hb_006778_010 Hb_012330_030 Hb_012330_030 Hb_000402_140--Hb_012330_030 Hb_026532_010 Hb_026532_010 Hb_068031_010--Hb_026532_010 Hb_001662_020 Hb_001662_020 Hb_068031_010--Hb_001662_020 Hb_011616_060 Hb_011616_060 Hb_068031_010--Hb_011616_060 Hb_090778_010 Hb_090778_010 Hb_068031_010--Hb_090778_010 Hb_124540_020 Hb_124540_020 Hb_068031_010--Hb_124540_020 Hb_010783_010 Hb_010783_010 Hb_068031_010--Hb_010783_010 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_005451_020 Hb_005451_020 Hb_004195_260--Hb_005451_020 Hb_004195_260--Hb_006674_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00326857 0.00446988 0.00435627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0182504

CAGE analysis