Hb_161017_020

Information

Type -
Description -
Location Contig161017: 21925-26876
Sequence    

Annotation

kegg
ID cam:101500443
description genome polyprotein-like
nr
ID XP_006393720.1
description hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID V4MI56
description Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10012231mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161017_020 0.0 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
2 Hb_000402_140 0.1767371865 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001645_020 0.1825655524 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
4 Hb_001902_170 0.1854050013 - - PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Nicotiana sylvestris]
5 Hb_000627_200 0.2116139876 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
6 Hb_182972_020 0.2129845284 - - cytochrome b6 [Gossypium barbadense]
7 Hb_179142_010 0.215126803 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
8 Hb_003693_030 0.2161611147 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
9 Hb_001570_030 0.2218546772 - - hypothetical protein JCGZ_13485 [Jatropha curcas]
10 Hb_031194_010 0.2224867981 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
11 Hb_001338_150 0.2251322074 - - hypothetical chloroplast RF1 [Dillenia indica]
12 Hb_003693_060 0.2290690734 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
13 Hb_149598_010 0.2292059812 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
14 Hb_006778_010 0.2300292196 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
15 Hb_001338_090 0.233641355 - - hypothetical protein VITISV_009275 [Vitis vinifera]
16 Hb_007645_060 0.2372040154 - - cytochrome f [Hevea brasiliensis]
17 Hb_000648_150 0.2375744698 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
18 Hb_004811_010 0.2379359218 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
19 Hb_088080_040 0.2379569435 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
20 Hb_002232_420 0.238914597 - - Palmitoyltransferase TIP1, putative [Ricinus communis]

Gene co-expression network

sample Hb_161017_020 Hb_161017_020 Hb_000402_140 Hb_000402_140 Hb_161017_020--Hb_000402_140 Hb_001645_020 Hb_001645_020 Hb_161017_020--Hb_001645_020 Hb_001902_170 Hb_001902_170 Hb_161017_020--Hb_001902_170 Hb_000627_200 Hb_000627_200 Hb_161017_020--Hb_000627_200 Hb_182972_020 Hb_182972_020 Hb_161017_020--Hb_182972_020 Hb_179142_010 Hb_179142_010 Hb_161017_020--Hb_179142_010 Hb_114010_020 Hb_114010_020 Hb_000402_140--Hb_114010_020 Hb_188319_010 Hb_188319_010 Hb_000402_140--Hb_188319_010 Hb_153142_010 Hb_153142_010 Hb_000402_140--Hb_153142_010 Hb_006778_010 Hb_006778_010 Hb_000402_140--Hb_006778_010 Hb_012330_030 Hb_012330_030 Hb_000402_140--Hb_012330_030 Hb_001645_020--Hb_182972_020 Hb_001645_020--Hb_000627_200 Hb_007645_060 Hb_007645_060 Hb_001645_020--Hb_007645_060 Hb_031194_010 Hb_031194_010 Hb_001645_020--Hb_031194_010 Hb_003693_030 Hb_003693_030 Hb_001645_020--Hb_003693_030 Hb_004811_010 Hb_004811_010 Hb_001645_020--Hb_004811_010 Hb_098068_010 Hb_098068_010 Hb_001902_170--Hb_098068_010 Hb_185274_020 Hb_185274_020 Hb_001902_170--Hb_185274_020 Hb_001338_150 Hb_001338_150 Hb_001902_170--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_001902_170--Hb_003032_090 Hb_001338_090 Hb_001338_090 Hb_001902_170--Hb_001338_090 Hb_000627_200--Hb_182972_020 Hb_000627_200--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_051924_010 Hb_051924_010 Hb_000627_200--Hb_051924_010 Hb_000627_200--Hb_003693_030 Hb_182972_020--Hb_007645_060 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_179142_010--Hb_007645_060 Hb_088080_040 Hb_088080_040 Hb_179142_010--Hb_088080_040 Hb_179142_010--Hb_000627_200 Hb_149598_010 Hb_149598_010 Hb_179142_010--Hb_149598_010 Hb_179142_010--Hb_004811_010 Hb_179142_010--Hb_182972_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00354831 0 0.00480321 0.00437818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0550112

CAGE analysis