Hb_001338_090

Information

Type -
Description -
Location Contig1338: 117486-120981
Sequence    

Annotation

kegg
ID atr:s00102p00104790
description AMTR_s00102p00104790; hypothetical protein
nr
ID CAN66875.1
description hypothetical protein VITISV_009275 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5ALV3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009275 PE=4 SV=1
Gene Ontology
ID GO:0009507
description unknow protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09522: 109899-117724 , PASA_asmbl_09525: 119958-120060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_090 0.0 - - hypothetical protein VITISV_009275 [Vitis vinifera]
2 Hb_023547_010 0.0926460255 - - protein binding protein, putative [Ricinus communis]
3 Hb_149598_010 0.1171883424 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
4 Hb_001338_170 0.137023807 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
5 Hb_179142_010 0.1432962921 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
6 Hb_027638_010 0.1489443973 - - Protein KES1, putative [Ricinus communis]
7 Hb_088080_040 0.1534802554 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
8 Hb_007645_060 0.1549229966 - - cytochrome f [Hevea brasiliensis]
9 Hb_171685_070 0.1587554705 - - -
10 Hb_184798_060 0.1609881186 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000627_200 0.1666961905 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
12 Hb_009193_050 0.1668878188 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
13 Hb_159308_010 0.1668987087 - - ribosomal protein S4 [Cercidiphyllum japonicum]
14 Hb_003144_040 0.168037458 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_000123_070 0.1681251115 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_004811_010 0.1708599101 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
17 Hb_000648_150 0.1713804606 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
18 Hb_004567_080 0.1717773306 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
19 Hb_004643_030 0.1717794827 - - conserved hypothetical protein [Ricinus communis]
20 Hb_177343_020 0.172118166 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]

Gene co-expression network

sample Hb_001338_090 Hb_001338_090 Hb_023547_010 Hb_023547_010 Hb_001338_090--Hb_023547_010 Hb_149598_010 Hb_149598_010 Hb_001338_090--Hb_149598_010 Hb_001338_170 Hb_001338_170 Hb_001338_090--Hb_001338_170 Hb_179142_010 Hb_179142_010 Hb_001338_090--Hb_179142_010 Hb_027638_010 Hb_027638_010 Hb_001338_090--Hb_027638_010 Hb_088080_040 Hb_088080_040 Hb_001338_090--Hb_088080_040 Hb_023547_010--Hb_149598_010 Hb_004375_020 Hb_004375_020 Hb_023547_010--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_023547_010--Hb_000123_070 Hb_023547_010--Hb_179142_010 Hb_000648_150 Hb_000648_150 Hb_023547_010--Hb_000648_150 Hb_007645_060 Hb_007645_060 Hb_149598_010--Hb_007645_060 Hb_007645_050 Hb_007645_050 Hb_149598_010--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_149598_010--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_001338_170 Hb_159308_010 Hb_159308_010 Hb_149598_010--Hb_159308_010 Hb_001338_170--Hb_007645_060 Hb_001338_170--Hb_007645_050 Hb_001338_170--Hb_159308_010 Hb_001338_170--Hb_088080_040 Hb_000627_200 Hb_000627_200 Hb_001338_170--Hb_000627_200 Hb_179142_010--Hb_007645_060 Hb_179142_010--Hb_088080_040 Hb_179142_010--Hb_000627_200 Hb_179142_010--Hb_149598_010 Hb_004811_010 Hb_004811_010 Hb_179142_010--Hb_004811_010 Hb_182972_020 Hb_182972_020 Hb_179142_010--Hb_182972_020 Hb_027638_010--Hb_088080_040 Hb_002551_030 Hb_002551_030 Hb_027638_010--Hb_002551_030 Hb_027638_010--Hb_001338_170 Hb_161881_010 Hb_161881_010 Hb_027638_010--Hb_161881_010 Hb_001508_010 Hb_001508_010 Hb_027638_010--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_027638_010--Hb_171685_070 Hb_031194_010 Hb_031194_010 Hb_088080_040--Hb_031194_010 Hb_088080_040--Hb_004811_010 Hb_088080_040--Hb_007645_060 Hb_003693_060 Hb_003693_060 Hb_088080_040--Hb_003693_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0254843 0.0570505 0 0 0.0291236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.834647

CAGE analysis