Hb_002551_030

Information

Type -
Description -
Location Contig2551: 17245-21999
Sequence    

Annotation

kegg
ID zma:103648418
description uncharacterized LOC103648418
nr
ID AAG51046.1
description gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q9LHM4
description Gypsy/Ty-3 retroelement polyprotein; 69905-74404 OS=Arabidopsis thaliana GN=T21B14.24 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transposon tf2-1 polyprotein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002551_030 0.0 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
2 Hb_062192_020 0.0728028386 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
3 Hb_027638_010 0.1069483835 - - Protein KES1, putative [Ricinus communis]
4 Hb_001508_010 0.1080927606 - - conserved hypothetical protein [Ricinus communis]
5 Hb_171685_070 0.1177760544 - - -
6 Hb_034168_010 0.1369832554 - - hypothetical protein [Azospirillum sp. CAG:260]
7 Hb_077242_020 0.1372546743 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
8 Hb_000336_130 0.1472388032 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
9 Hb_001490_020 0.1513120074 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_034168_070 0.1537838013 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
11 Hb_002553_030 0.1551928603 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
12 Hb_079902_010 0.1561434792 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
13 Hb_001338_170 0.1568248504 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
14 Hb_062192_030 0.1582892403 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
15 Hb_161881_010 0.1597065839 - - laccase, putative [Ricinus communis]
16 Hb_101462_010 0.1630145123 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
17 Hb_088080_040 0.1630149965 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
18 Hb_001338_080 0.166775399 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
19 Hb_002010_010 0.167050298 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_156746_010 0.1670696854 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_002551_030 Hb_002551_030 Hb_062192_020 Hb_062192_020 Hb_002551_030--Hb_062192_020 Hb_027638_010 Hb_027638_010 Hb_002551_030--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_002551_030--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_002551_030--Hb_171685_070 Hb_034168_010 Hb_034168_010 Hb_002551_030--Hb_034168_010 Hb_077242_020 Hb_077242_020 Hb_002551_030--Hb_077242_020 Hb_062192_020--Hb_034168_010 Hb_062192_020--Hb_027638_010 Hb_062192_020--Hb_001508_010 Hb_062192_020--Hb_171685_070 Hb_001490_020 Hb_001490_020 Hb_062192_020--Hb_001490_020 Hb_088080_040 Hb_088080_040 Hb_027638_010--Hb_088080_040 Hb_001338_170 Hb_001338_170 Hb_027638_010--Hb_001338_170 Hb_161881_010 Hb_161881_010 Hb_027638_010--Hb_161881_010 Hb_027638_010--Hb_001508_010 Hb_027638_010--Hb_171685_070 Hb_079902_010 Hb_079902_010 Hb_001508_010--Hb_079902_010 Hb_000373_140 Hb_000373_140 Hb_001508_010--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_001508_010--Hb_077242_020 Hb_000336_130 Hb_000336_130 Hb_171685_070--Hb_000336_130 Hb_171685_070--Hb_161881_010 Hb_002010_010 Hb_002010_010 Hb_171685_070--Hb_002010_010 Hb_003732_030 Hb_003732_030 Hb_171685_070--Hb_003732_030 Hb_000920_020 Hb_000920_020 Hb_034168_010--Hb_000920_020 Hb_189099_020 Hb_189099_020 Hb_034168_010--Hb_189099_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_030 Hb_062192_030 Hb_034168_010--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_077242_020--Hb_041813_030 Hb_006040_030 Hb_006040_030 Hb_077242_020--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_077242_020--Hb_042463_070 Hb_077242_020--Hb_079902_010 Hb_077242_020--Hb_101462_010 Hb_156746_010 Hb_156746_010 Hb_077242_020--Hb_156746_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0042022 0.0103579 0.00653473 0.00572505 0 0.00380992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00296464 0.176807

CAGE analysis