Hb_062192_020

Information

Type -
Description -
Location Contig62192: 8546-9262
Sequence    

Annotation

kegg
ID rcu:RCOM_2091740
description hypothetical protein
nr
ID BAO50886.1
description cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
swissprot
ID Q04647
description Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1
trembl
ID W6JNB4
description Cytochrome c biogenesis FN OS=Hevea brasiliensis GN=ccmFn PE=4 SV=1
Gene Ontology
ID GO:0016020
description cytochrome c biogenesis fn

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062192_020 0.0 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
2 Hb_002551_030 0.0728028386 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
3 Hb_034168_010 0.1308450522 - - hypothetical protein [Azospirillum sp. CAG:260]
4 Hb_027638_010 0.1498284122 - - Protein KES1, putative [Ricinus communis]
5 Hb_001508_010 0.1510365483 - - conserved hypothetical protein [Ricinus communis]
6 Hb_171685_070 0.1696397682 - - -
7 Hb_001490_020 0.1696986646 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_062192_030 0.1714905212 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
9 Hb_003414_040 0.1741089086 - - hypothetical protein VITISV_016691 [Vitis vinifera]
10 Hb_034168_070 0.1754089703 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
11 Hb_000336_130 0.1800867978 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
12 Hb_004374_090 0.1805458465 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
13 Hb_077242_020 0.1811411326 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
14 Hb_042463_070 0.1822424736 - - 60S ribosomal protein L16, putative [Ricinus communis]
15 Hb_001338_080 0.1849066618 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
16 Hb_062273_010 0.1850304459 - - ATP synthase F0 subunit 9 [Chara vulgaris]
17 Hb_000432_020 0.1868072127 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
18 Hb_000920_020 0.1900506342 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
19 Hb_012528_040 0.1915646699 - - -
20 Hb_001221_350 0.1924165895 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_062192_020 Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_062192_020--Hb_002551_030 Hb_034168_010 Hb_034168_010 Hb_062192_020--Hb_034168_010 Hb_027638_010 Hb_027638_010 Hb_062192_020--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_062192_020--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_062192_020--Hb_171685_070 Hb_001490_020 Hb_001490_020 Hb_062192_020--Hb_001490_020 Hb_002551_030--Hb_027638_010 Hb_002551_030--Hb_001508_010 Hb_002551_030--Hb_171685_070 Hb_002551_030--Hb_034168_010 Hb_077242_020 Hb_077242_020 Hb_002551_030--Hb_077242_020 Hb_000920_020 Hb_000920_020 Hb_034168_010--Hb_000920_020 Hb_189099_020 Hb_189099_020 Hb_034168_010--Hb_189099_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_030 Hb_062192_030 Hb_034168_010--Hb_062192_030 Hb_088080_040 Hb_088080_040 Hb_027638_010--Hb_088080_040 Hb_001338_170 Hb_001338_170 Hb_027638_010--Hb_001338_170 Hb_161881_010 Hb_161881_010 Hb_027638_010--Hb_161881_010 Hb_027638_010--Hb_001508_010 Hb_027638_010--Hb_171685_070 Hb_079902_010 Hb_079902_010 Hb_001508_010--Hb_079902_010 Hb_000373_140 Hb_000373_140 Hb_001508_010--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_001508_010--Hb_077242_020 Hb_000336_130 Hb_000336_130 Hb_171685_070--Hb_000336_130 Hb_171685_070--Hb_161881_010 Hb_002010_010 Hb_002010_010 Hb_171685_070--Hb_002010_010 Hb_003732_030 Hb_003732_030 Hb_171685_070--Hb_003732_030 Hb_001490_020--Hb_101462_010 Hb_001490_020--Hb_000336_130 Hb_001490_020--Hb_077242_020 Hb_013420_050 Hb_013420_050 Hb_001490_020--Hb_013420_050 Hb_042463_070 Hb_042463_070 Hb_001490_020--Hb_042463_070 Hb_006040_020 Hb_006040_020 Hb_001490_020--Hb_006040_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182589 0.219645 0.164232 0.133976 0 0.0963316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.160531 3.88624

CAGE analysis