Hb_023547_010

Information

Type -
Description -
Location Contig23547: 7415-8008
Sequence    

Annotation

kegg
ID rcu:RCOM_1206820
description protein binding protein, putative
nr
ID XP_002530848.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXZ1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1206820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023547_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001338_090 0.0926460255 - - hypothetical protein VITISV_009275 [Vitis vinifera]
3 Hb_149598_010 0.1294390437 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
4 Hb_004375_020 0.1382785736 - - hypothetical protein VITISV_034560 [Vitis vinifera]
5 Hb_000123_070 0.150649594 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_179142_010 0.1517311441 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
7 Hb_000648_150 0.1521410286 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
8 Hb_171685_070 0.1568748995 - - -
9 Hb_014109_020 0.1579632985 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
10 Hb_027638_010 0.158301804 - - Protein KES1, putative [Ricinus communis]
11 Hb_007645_060 0.1583549404 - - cytochrome f [Hevea brasiliensis]
12 Hb_001338_170 0.1596339254 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
13 Hb_004208_040 0.1634593669 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
14 Hb_013420_050 0.1640863586 - - hypothetical protein (mitochondrion) [Vicia faba]
15 Hb_001490_020 0.1644710951 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_088080_040 0.16501419 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
17 Hb_004161_040 0.1681488943 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
18 Hb_004987_040 0.1682440623 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_159308_010 0.1690383957 - - ribosomal protein S4 [Cercidiphyllum japonicum]
20 Hb_012528_040 0.1700985985 - - -

Gene co-expression network

sample Hb_023547_010 Hb_023547_010 Hb_001338_090 Hb_001338_090 Hb_023547_010--Hb_001338_090 Hb_149598_010 Hb_149598_010 Hb_023547_010--Hb_149598_010 Hb_004375_020 Hb_004375_020 Hb_023547_010--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_023547_010--Hb_000123_070 Hb_179142_010 Hb_179142_010 Hb_023547_010--Hb_179142_010 Hb_000648_150 Hb_000648_150 Hb_023547_010--Hb_000648_150 Hb_001338_090--Hb_149598_010 Hb_001338_170 Hb_001338_170 Hb_001338_090--Hb_001338_170 Hb_001338_090--Hb_179142_010 Hb_027638_010 Hb_027638_010 Hb_001338_090--Hb_027638_010 Hb_088080_040 Hb_088080_040 Hb_001338_090--Hb_088080_040 Hb_007645_060 Hb_007645_060 Hb_149598_010--Hb_007645_060 Hb_007645_050 Hb_007645_050 Hb_149598_010--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_149598_010--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_001338_170 Hb_159308_010 Hb_159308_010 Hb_149598_010--Hb_159308_010 Hb_004987_040 Hb_004987_040 Hb_004375_020--Hb_004987_040 Hb_000373_140 Hb_000373_140 Hb_004375_020--Hb_000373_140 Hb_004208_040 Hb_004208_040 Hb_004375_020--Hb_004208_040 Hb_101462_010 Hb_101462_010 Hb_004375_020--Hb_101462_010 Hb_004375_020--Hb_000123_070 Hb_010053_060 Hb_010053_060 Hb_004375_020--Hb_010053_060 Hb_000123_070--Hb_101462_010 Hb_161881_010 Hb_161881_010 Hb_000123_070--Hb_161881_010 Hb_012528_040 Hb_012528_040 Hb_000123_070--Hb_012528_040 Hb_000123_070--Hb_007595_030 Hb_000123_070--Hb_000373_140 Hb_000938_050 Hb_000938_050 Hb_000123_070--Hb_000938_050 Hb_179142_010--Hb_007645_060 Hb_179142_010--Hb_088080_040 Hb_000627_200 Hb_000627_200 Hb_179142_010--Hb_000627_200 Hb_179142_010--Hb_149598_010 Hb_004811_010 Hb_004811_010 Hb_179142_010--Hb_004811_010 Hb_182972_020 Hb_182972_020 Hb_179142_010--Hb_182972_020 Hb_000648_150--Hb_159308_010 Hb_000648_150--Hb_000627_200 Hb_115031_010 Hb_115031_010 Hb_000648_150--Hb_115031_010 Hb_000648_150--Hb_007645_060 Hb_000648_150--Hb_182972_020 Hb_145745_030 Hb_145745_030 Hb_000648_150--Hb_145745_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0451842 0.100835 0 0 0.0662778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0330553 1.86767

CAGE analysis