Hb_115031_010

Information

Type -
Description -
Location Contig115031: 4405-5730
Sequence    

Annotation

kegg
ID mtr:MTR_4g034680
description Photosystem II CP47 chlorophyll apoprotein
nr
ID ACA30561.1
description photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
swissprot
ID Q2QD63
description Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1
trembl
ID B1PLP4
description Photosystem II P680 chlorophyll A apoprotein (Fragment) OS=Oenothera oakesiana GN=psbB PE=4 SV=1
Gene Ontology
ID GO:0009507
description photosystem ii p680 chlorophyll a partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115031_010 0.0 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
2 Hb_000648_150 0.1135494475 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
3 Hb_106692_020 0.1318889146 - - NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
4 Hb_001674_050 0.1359547655 - - cytochrome b6 (chloroplast) [Apios americana]
5 Hb_182972_020 0.1420287413 - - cytochrome b6 [Gossypium barbadense]
6 Hb_001645_020 0.147906462 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
7 Hb_141708_010 0.1484162866 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
8 Hb_001338_170 0.1518830942 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
9 Hb_159308_010 0.1524113359 - - ribosomal protein S4 [Cercidiphyllum japonicum]
10 Hb_000627_200 0.1529498468 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
11 Hb_000832_050 0.1606362004 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
12 Hb_001338_080 0.1639289006 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
13 Hb_007645_060 0.1653057477 - - cytochrome f [Hevea brasiliensis]
14 Hb_003693_030 0.1681247317 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
15 Hb_019253_040 0.1682498213 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000100_120 0.1683700951 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
17 Hb_007645_070 0.1719446186 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
18 Hb_145745_010 0.1719699815 - - BnaUnng00830D [Brassica napus]
19 Hb_015981_010 0.1746569124 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_008489_030 0.1747934102 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_115031_010 Hb_115031_010 Hb_000648_150 Hb_000648_150 Hb_115031_010--Hb_000648_150 Hb_106692_020 Hb_106692_020 Hb_115031_010--Hb_106692_020 Hb_001674_050 Hb_001674_050 Hb_115031_010--Hb_001674_050 Hb_182972_020 Hb_182972_020 Hb_115031_010--Hb_182972_020 Hb_001645_020 Hb_001645_020 Hb_115031_010--Hb_001645_020 Hb_141708_010 Hb_141708_010 Hb_115031_010--Hb_141708_010 Hb_159308_010 Hb_159308_010 Hb_000648_150--Hb_159308_010 Hb_000627_200 Hb_000627_200 Hb_000648_150--Hb_000627_200 Hb_007645_060 Hb_007645_060 Hb_000648_150--Hb_007645_060 Hb_000648_150--Hb_182972_020 Hb_145745_030 Hb_145745_030 Hb_000648_150--Hb_145745_030 Hb_019253_040 Hb_019253_040 Hb_106692_020--Hb_019253_040 Hb_003693_020 Hb_003693_020 Hb_106692_020--Hb_003693_020 Hb_106692_020--Hb_001645_020 Hb_106692_020--Hb_182972_020 Hb_003693_030 Hb_003693_030 Hb_106692_020--Hb_003693_030 Hb_001674_050--Hb_141708_010 Hb_001338_080 Hb_001338_080 Hb_001674_050--Hb_001338_080 Hb_063885_010 Hb_063885_010 Hb_001674_050--Hb_063885_010 Hb_001674_050--Hb_182972_020 Hb_001083_040 Hb_001083_040 Hb_001674_050--Hb_001083_040 Hb_151890_020 Hb_151890_020 Hb_001674_050--Hb_151890_020 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_182972_020--Hb_001645_020 Hb_182972_020--Hb_151890_020 Hb_051924_010 Hb_051924_010 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_001645_020--Hb_000627_200 Hb_001645_020--Hb_007645_060 Hb_031194_010 Hb_031194_010 Hb_001645_020--Hb_031194_010 Hb_001645_020--Hb_003693_030 Hb_004811_010 Hb_004811_010 Hb_001645_020--Hb_004811_010 Hb_141708_010--Hb_001338_080 Hb_141708_010--Hb_182972_020 Hb_141708_010--Hb_000627_200 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.51229 0.923336 0 1.15743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.152853 0 0 18.6143

CAGE analysis