Hb_106692_020

Information

Type -
Description -
Location Contig106692: 23266-23858
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00102
description ndhF; NADH dehydrogenase subunit 5
nr
ID ADC44034.1
description NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
swissprot
ID B1NWJ6
description NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta GN=ndhF PE=3 SV=1
trembl
ID D3GFG2
description NADH dehydrogenase subunit F (Fragment) OS=Hevea sp. Gillespie 4272 GN=ndhF PE=4 SV=1
Gene Ontology
ID GO:0009507
description nadh dehydrogenase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02075: 23423-23869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106692_020 0.0 - - NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
2 Hb_115031_010 0.1318889146 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
3 Hb_019253_040 0.1753021758 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003693_020 0.178340203 - - Ycf1, partial (chloroplast) [Clusia rosea]
5 Hb_001645_020 0.1790183811 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
6 Hb_182972_020 0.1813499651 - - cytochrome b6 [Gossypium barbadense]
7 Hb_003693_030 0.1845120144 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
8 Hb_141708_010 0.1866498644 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
9 Hb_000100_120 0.1868153447 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
10 Hb_001338_080 0.1877914849 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
11 Hb_001674_050 0.1899642754 - - cytochrome b6 (chloroplast) [Apios americana]
12 Hb_000648_150 0.1903397909 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
13 Hb_000627_200 0.1903580257 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
14 Hb_159305_010 0.1905988838 - - rpl2 [Jatropha curcas]
15 Hb_051924_010 0.1967614885 - - BnaA01g34100D [Brassica napus]
16 Hb_000012_440 0.1974504542 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
17 Hb_031194_010 0.1988502229 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
18 Hb_000156_240 0.2010945638 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
19 Hb_007645_060 0.2013373344 - - cytochrome f [Hevea brasiliensis]
20 Hb_159308_010 0.2020275959 - - ribosomal protein S4 [Cercidiphyllum japonicum]

Gene co-expression network

sample Hb_106692_020 Hb_106692_020 Hb_115031_010 Hb_115031_010 Hb_106692_020--Hb_115031_010 Hb_019253_040 Hb_019253_040 Hb_106692_020--Hb_019253_040 Hb_003693_020 Hb_003693_020 Hb_106692_020--Hb_003693_020 Hb_001645_020 Hb_001645_020 Hb_106692_020--Hb_001645_020 Hb_182972_020 Hb_182972_020 Hb_106692_020--Hb_182972_020 Hb_003693_030 Hb_003693_030 Hb_106692_020--Hb_003693_030 Hb_000648_150 Hb_000648_150 Hb_115031_010--Hb_000648_150 Hb_001674_050 Hb_001674_050 Hb_115031_010--Hb_001674_050 Hb_115031_010--Hb_182972_020 Hb_115031_010--Hb_001645_020 Hb_141708_010 Hb_141708_010 Hb_115031_010--Hb_141708_010 Hb_007645_060 Hb_007645_060 Hb_019253_040--Hb_007645_060 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_051924_010 Hb_051924_010 Hb_019253_040--Hb_051924_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_001338_080 Hb_001338_080 Hb_019253_040--Hb_001338_080 Hb_000156_240 Hb_000156_240 Hb_003693_020--Hb_000156_240 Hb_031194_010 Hb_031194_010 Hb_003693_020--Hb_031194_010 Hb_002027_420 Hb_002027_420 Hb_003693_020--Hb_002027_420 Hb_003963_040 Hb_003963_040 Hb_003693_020--Hb_003963_040 Hb_003693_020--Hb_019253_040 Hb_004542_030 Hb_004542_030 Hb_003693_020--Hb_004542_030 Hb_001645_020--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_001645_020--Hb_000627_200 Hb_001645_020--Hb_007645_060 Hb_001645_020--Hb_031194_010 Hb_001645_020--Hb_003693_030 Hb_001645_020--Hb_004811_010 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_003693_030--Hb_000627_200 Hb_003693_030--Hb_051924_010 Hb_003693_030--Hb_182972_020 Hb_001338_150 Hb_001338_150 Hb_003693_030--Hb_001338_150 Hb_003693_030--Hb_001338_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0493416 0.549223 0.346476 0.0579971 0.644204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134655 0.211573 0 0 7.51168

CAGE analysis