Hb_098068_010

Information

Type -
Description -
Location Contig98068: 965-2873
Sequence    

Annotation

kegg
ID rcu:RCOM_1095380
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_012081472.1
description PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
swissprot
ID Q9LK90
description Putative phospholipid-transporting ATPase 8 OS=Arabidopsis thaliana GN=ALA8 PE=3 SV=1
trembl
ID A0A067LKV1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_09584 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098068_010 0.0 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
2 Hb_001902_170 0.1940572767 - - PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Nicotiana sylvestris]
3 Hb_104735_020 0.2185951933 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
4 Hb_001300_090 0.2262574981 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
5 Hb_003540_070 0.2346275527 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
6 Hb_000012_440 0.2380149302 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
7 Hb_101733_010 0.2418695399 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000518_040 0.244377882 - - -
9 Hb_004951_030 0.2444405718 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
10 Hb_007201_010 0.2455771655 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
11 Hb_000208_220 0.2480145392 - - -
12 Hb_032717_090 0.250200913 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001761_160 0.2505128958 - - hypothetical protein VITISV_019364 [Vitis vinifera]
14 Hb_003687_160 0.2506798717 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_003992_200 0.2559070638 - - -
16 Hb_185274_020 0.2569136438 - - Ycf2 (chloroplast) [Andrographis paniculata]
17 Hb_171685_070 0.2583664328 - - -
18 Hb_003414_020 0.2588633858 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
19 Hb_001081_050 0.25988965 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
20 Hb_000031_200 0.2612552721 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]

Gene co-expression network

sample Hb_098068_010 Hb_098068_010 Hb_001902_170 Hb_001902_170 Hb_098068_010--Hb_001902_170 Hb_104735_020 Hb_104735_020 Hb_098068_010--Hb_104735_020 Hb_001300_090 Hb_001300_090 Hb_098068_010--Hb_001300_090 Hb_003540_070 Hb_003540_070 Hb_098068_010--Hb_003540_070 Hb_000012_440 Hb_000012_440 Hb_098068_010--Hb_000012_440 Hb_101733_010 Hb_101733_010 Hb_098068_010--Hb_101733_010 Hb_161017_020 Hb_161017_020 Hb_001902_170--Hb_161017_020 Hb_185274_020 Hb_185274_020 Hb_001902_170--Hb_185274_020 Hb_001338_150 Hb_001338_150 Hb_001902_170--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_001902_170--Hb_003032_090 Hb_001338_090 Hb_001338_090 Hb_001902_170--Hb_001338_090 Hb_042463_020 Hb_042463_020 Hb_104735_020--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_104735_020--Hb_034168_070 Hb_062273_010 Hb_062273_010 Hb_104735_020--Hb_062273_010 Hb_000518_040 Hb_000518_040 Hb_104735_020--Hb_000518_040 Hb_072212_020 Hb_072212_020 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010 Hb_000208_220 Hb_000208_220 Hb_001300_090--Hb_000208_220 Hb_000672_130 Hb_000672_130 Hb_001300_090--Hb_000672_130 Hb_004643_020 Hb_004643_020 Hb_001300_090--Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_001300_090--Hb_003796_010 Hb_006827_010 Hb_006827_010 Hb_001300_090--Hb_006827_010 Hb_029510_060 Hb_029510_060 Hb_001300_090--Hb_029510_060 Hb_003291_030 Hb_003291_030 Hb_003540_070--Hb_003291_030 Hb_008484_020 Hb_008484_020 Hb_003540_070--Hb_008484_020 Hb_001295_080 Hb_001295_080 Hb_003540_070--Hb_001295_080 Hb_023738_010 Hb_023738_010 Hb_003540_070--Hb_023738_010 Hb_000951_070 Hb_000951_070 Hb_003540_070--Hb_000951_070 Hb_003540_070--Hb_029510_060 Hb_004987_030 Hb_004987_030 Hb_000012_440--Hb_004987_030 Hb_005656_150 Hb_005656_150 Hb_000012_440--Hb_005656_150 Hb_000699_080 Hb_000699_080 Hb_000012_440--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_000012_440--Hb_006925_030 Hb_088080_030 Hb_088080_030 Hb_000012_440--Hb_088080_030 Hb_000012_440--Hb_003032_090 Hb_101733_010--Hb_072212_020 Hb_144838_010 Hb_144838_010 Hb_101733_010--Hb_144838_010 Hb_101733_010--Hb_088080_030 Hb_000879_260 Hb_000879_260 Hb_101733_010--Hb_000879_260 Hb_007201_010 Hb_007201_010 Hb_101733_010--Hb_007201_010 Hb_013420_010 Hb_013420_010 Hb_101733_010--Hb_013420_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.132062 0.0504175 0.0121737 0.0162649 0.0569949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.029127 0 0 0.665796

CAGE analysis