Hb_001902_170

Information

Type -
Description -
Location Contig1902: 115900-123387
Sequence    

Annotation

kegg
ID sot:102595013
description putative glucan endo-1,3-beta-glucosidase GVI-like
nr
ID XP_009767610.1
description PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Nicotiana sylvestris]
swissprot
ID Q02439
description Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1
trembl
ID M1B506
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014351 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase gvi

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_170 0.0 - - PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Nicotiana sylvestris]
2 Hb_161017_020 0.1854050013 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
3 Hb_098068_010 0.1940572767 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
4 Hb_185274_020 0.1958401505 - - Ycf2 (chloroplast) [Andrographis paniculata]
5 Hb_001338_150 0.2059598641 - - hypothetical chloroplast RF1 [Dillenia indica]
6 Hb_003032_090 0.2101766697 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
7 Hb_001338_090 0.2127395287 - - hypothetical protein VITISV_009275 [Vitis vinifera]
8 Hb_179142_010 0.2157245945 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
9 Hb_005656_150 0.2165656344 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
10 Hb_031194_010 0.2244124221 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
11 Hb_003693_030 0.2262969198 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
12 Hb_003693_060 0.2263046529 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
13 Hb_171685_070 0.2265343385 - - -
14 Hb_003125_100 0.2296464534 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
15 Hb_001645_020 0.2312871324 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
16 Hb_000012_440 0.2316188678 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
17 Hb_162094_010 0.2318128316 - - RNA polymerase alpha subunit [Hevea brasiliensis]
18 Hb_088080_040 0.2329301139 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
19 Hb_023547_010 0.2357107875 - - protein binding protein, putative [Ricinus communis]
20 Hb_000627_200 0.235869164 - - NADH dehydrogenase subunit I [Hevea brasiliensis]

Gene co-expression network

sample Hb_001902_170 Hb_001902_170 Hb_161017_020 Hb_161017_020 Hb_001902_170--Hb_161017_020 Hb_098068_010 Hb_098068_010 Hb_001902_170--Hb_098068_010 Hb_185274_020 Hb_185274_020 Hb_001902_170--Hb_185274_020 Hb_001338_150 Hb_001338_150 Hb_001902_170--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_001902_170--Hb_003032_090 Hb_001338_090 Hb_001338_090 Hb_001902_170--Hb_001338_090 Hb_000402_140 Hb_000402_140 Hb_161017_020--Hb_000402_140 Hb_001645_020 Hb_001645_020 Hb_161017_020--Hb_001645_020 Hb_000627_200 Hb_000627_200 Hb_161017_020--Hb_000627_200 Hb_182972_020 Hb_182972_020 Hb_161017_020--Hb_182972_020 Hb_179142_010 Hb_179142_010 Hb_161017_020--Hb_179142_010 Hb_104735_020 Hb_104735_020 Hb_098068_010--Hb_104735_020 Hb_001300_090 Hb_001300_090 Hb_098068_010--Hb_001300_090 Hb_003540_070 Hb_003540_070 Hb_098068_010--Hb_003540_070 Hb_000012_440 Hb_000012_440 Hb_098068_010--Hb_000012_440 Hb_101733_010 Hb_101733_010 Hb_098068_010--Hb_101733_010 Hb_001083_040 Hb_001083_040 Hb_185274_020--Hb_001083_040 Hb_003125_100 Hb_003125_100 Hb_185274_020--Hb_003125_100 Hb_000156_240 Hb_000156_240 Hb_185274_020--Hb_000156_240 Hb_185274_020--Hb_003032_090 Hb_000029_380 Hb_000029_380 Hb_185274_020--Hb_000029_380 Hb_185274_010 Hb_185274_010 Hb_185274_020--Hb_185274_010 Hb_001338_150--Hb_003032_090 Hb_003963_040 Hb_003963_040 Hb_001338_150--Hb_003963_040 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_160 Hb_001338_160 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_003032_090--Hb_003963_040 Hb_003032_090--Hb_000156_240 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_023547_010 Hb_023547_010 Hb_001338_090--Hb_023547_010 Hb_149598_010 Hb_149598_010 Hb_001338_090--Hb_149598_010 Hb_001338_170 Hb_001338_170 Hb_001338_090--Hb_001338_170 Hb_001338_090--Hb_179142_010 Hb_027638_010 Hb_027638_010 Hb_001338_090--Hb_027638_010 Hb_088080_040 Hb_088080_040 Hb_001338_090--Hb_088080_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0658402 0.0765492 0.0134618 0.0661343 0.0869136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.922356

CAGE analysis