Hb_068031_010

Information

Type -
Description -
Location Contig68031: 3340-9891
Sequence    

Annotation

kegg
ID csv:101206063
description uncharacterized LOC101206063
nr
ID CAN63054.1
description hypothetical protein VITISV_034229 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1F0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034229 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068031_010 0.0 - - hypothetical protein VITISV_034229 [Vitis vinifera]
2 Hb_026532_010 0.1958227489 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
3 Hb_001662_020 0.195842628 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
4 Hb_011616_060 0.1958441027 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
5 Hb_090778_010 0.1958476919 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
6 Hb_124540_020 0.1958701619 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_010783_010 0.1960557806 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_001817_190 0.1960611616 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_001972_020 0.196069549 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_004019_100 0.1961088959 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
11 Hb_001309_030 0.1961164668 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000710_120 0.1961308777 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
13 Hb_008976_010 0.1961535405 - - -
14 Hb_009188_010 0.1962421654 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_011537_090 0.1965048908 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
16 Hb_097889_010 0.1966684931 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
17 Hb_003752_040 0.2059072353 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
18 Hb_000918_050 0.2072170896 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_020250_020 0.2164148064 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
20 Hb_186440_010 0.2178303923 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_068031_010 Hb_068031_010 Hb_026532_010 Hb_026532_010 Hb_068031_010--Hb_026532_010 Hb_001662_020 Hb_001662_020 Hb_068031_010--Hb_001662_020 Hb_011616_060 Hb_011616_060 Hb_068031_010--Hb_011616_060 Hb_090778_010 Hb_090778_010 Hb_068031_010--Hb_090778_010 Hb_124540_020 Hb_124540_020 Hb_068031_010--Hb_124540_020 Hb_010783_010 Hb_010783_010 Hb_068031_010--Hb_010783_010 Hb_026532_010--Hb_001662_020 Hb_026532_010--Hb_011616_060 Hb_026532_010--Hb_090778_010 Hb_026532_010--Hb_124540_020 Hb_026532_010--Hb_010783_010 Hb_001817_190 Hb_001817_190 Hb_026532_010--Hb_001817_190 Hb_001662_020--Hb_011616_060 Hb_001662_020--Hb_090778_010 Hb_001662_020--Hb_124540_020 Hb_001662_020--Hb_010783_010 Hb_001662_020--Hb_001817_190 Hb_011616_060--Hb_090778_010 Hb_011616_060--Hb_124540_020 Hb_011616_060--Hb_010783_010 Hb_011616_060--Hb_001817_190 Hb_090778_010--Hb_124540_020 Hb_090778_010--Hb_010783_010 Hb_090778_010--Hb_001817_190 Hb_124540_020--Hb_010783_010 Hb_124540_020--Hb_001817_190 Hb_010783_010--Hb_001817_190 Hb_001972_020 Hb_001972_020 Hb_010783_010--Hb_001972_020 Hb_004019_100 Hb_004019_100 Hb_010783_010--Hb_004019_100 Hb_001309_030 Hb_001309_030 Hb_010783_010--Hb_001309_030 Hb_000710_120 Hb_000710_120 Hb_010783_010--Hb_000710_120 Hb_008976_010 Hb_008976_010 Hb_010783_010--Hb_008976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00675532 0.0166046 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0671867

CAGE analysis