Hb_001817_190

Information

Type -
Description -
Location Contig1817: 182985-187555
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_190 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_010783_010 0.0001116075 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001972_020 0.0001715049 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_004019_100 0.0009399885 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
5 Hb_001309_030 0.0010817046 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000710_120 0.0013465352 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
7 Hb_008976_010 0.0017508804 - - -
8 Hb_009188_010 0.0032133355 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_124540_020 0.0054233376 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_090778_010 0.0066034175 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
11 Hb_011537_090 0.0068159546 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
12 Hb_011616_060 0.0068337647 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
13 Hb_001662_020 0.0069335921 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
14 Hb_097889_010 0.0087123435 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
15 Hb_026532_010 0.0090805336 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
16 Hb_186440_010 0.0875636212 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_027890_010 0.1257709945 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_031691_010 0.1298560916 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_012330_030 0.1418094633 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012404_010 0.1478934266 - - -

Gene co-expression network

sample Hb_001817_190 Hb_001817_190 Hb_010783_010 Hb_010783_010 Hb_001817_190--Hb_010783_010 Hb_001972_020 Hb_001972_020 Hb_001817_190--Hb_001972_020 Hb_004019_100 Hb_004019_100 Hb_001817_190--Hb_004019_100 Hb_001309_030 Hb_001309_030 Hb_001817_190--Hb_001309_030 Hb_000710_120 Hb_000710_120 Hb_001817_190--Hb_000710_120 Hb_008976_010 Hb_008976_010 Hb_001817_190--Hb_008976_010 Hb_010783_010--Hb_001972_020 Hb_010783_010--Hb_004019_100 Hb_010783_010--Hb_001309_030 Hb_010783_010--Hb_000710_120 Hb_010783_010--Hb_008976_010 Hb_001972_020--Hb_004019_100 Hb_001972_020--Hb_001309_030 Hb_001972_020--Hb_000710_120 Hb_001972_020--Hb_008976_010 Hb_004019_100--Hb_001309_030 Hb_004019_100--Hb_000710_120 Hb_004019_100--Hb_008976_010 Hb_001309_030--Hb_000710_120 Hb_001309_030--Hb_008976_010 Hb_000710_120--Hb_008976_010 Hb_009188_010 Hb_009188_010 Hb_008976_010--Hb_009188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00470904 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0179814

CAGE analysis