Hb_001031_050

Information

Type -
Description -
Location Contig1031: 84007-85700
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_050 0.0 - - -
2 Hb_006674_020 0.2182872415 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001965_020 0.2460150912 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
4 Hb_002518_110 0.2586421971 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
5 Hb_002249_210 0.2615553545 - - -
6 Hb_008092_080 0.2706553515 - - elongation factor ts, putative [Ricinus communis]
7 Hb_011574_010 0.2861242299 - - -
8 Hb_090530_010 0.2957735136 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_008123_010 0.2987477902 - - -
10 Hb_153142_010 0.2990025052 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
11 Hb_001160_010 0.3048377438 - - -
12 Hb_188319_010 0.3053234913 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_105581_010 0.3063801661 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_017225_010 0.3110373461 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
15 Hb_143629_060 0.3122573846 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
16 Hb_005140_010 0.3138180054 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_032920_100 0.3146536403 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
18 Hb_114010_020 0.3151272487 - - -
19 Hb_003038_150 0.3189909979 - - -
20 Hb_000330_080 0.3217329448 - - auxilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001031_050 Hb_001031_050 Hb_006674_020 Hb_006674_020 Hb_001031_050--Hb_006674_020 Hb_001965_020 Hb_001965_020 Hb_001031_050--Hb_001965_020 Hb_002518_110 Hb_002518_110 Hb_001031_050--Hb_002518_110 Hb_002249_210 Hb_002249_210 Hb_001031_050--Hb_002249_210 Hb_008092_080 Hb_008092_080 Hb_001031_050--Hb_008092_080 Hb_011574_010 Hb_011574_010 Hb_001031_050--Hb_011574_010 Hb_153142_010 Hb_153142_010 Hb_006674_020--Hb_153142_010 Hb_188319_010 Hb_188319_010 Hb_006674_020--Hb_188319_010 Hb_114010_020 Hb_114010_020 Hb_006674_020--Hb_114010_020 Hb_153665_010 Hb_153665_010 Hb_006674_020--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_006674_020--Hb_000599_070 Hb_000330_080 Hb_000330_080 Hb_001965_020--Hb_000330_080 Hb_032920_100 Hb_032920_100 Hb_001965_020--Hb_032920_100 Hb_001709_130 Hb_001709_130 Hb_001965_020--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_001965_020--Hb_021068_010 Hb_183574_010 Hb_183574_010 Hb_001965_020--Hb_183574_010 Hb_011310_090 Hb_011310_090 Hb_002518_110--Hb_011310_090 Hb_002636_040 Hb_002636_040 Hb_002518_110--Hb_002636_040 Hb_017098_010 Hb_017098_010 Hb_002518_110--Hb_017098_010 Hb_008123_010 Hb_008123_010 Hb_002518_110--Hb_008123_010 Hb_090530_010 Hb_090530_010 Hb_002518_110--Hb_090530_010 Hb_004244_010 Hb_004244_010 Hb_002518_110--Hb_004244_010 Hb_002249_210--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_002249_210--Hb_023675_030 Hb_003038_150 Hb_003038_150 Hb_002249_210--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_002249_210--Hb_000703_300 Hb_002249_210--Hb_000330_080 Hb_002249_210--Hb_008123_010 Hb_008092_080--Hb_090530_010 Hb_024714_080 Hb_024714_080 Hb_008092_080--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_008092_080--Hb_003077_130 Hb_002681_080 Hb_002681_080 Hb_008092_080--Hb_002681_080 Hb_000069_490 Hb_000069_490 Hb_008092_080--Hb_000069_490 Hb_003427_080 Hb_003427_080 Hb_008092_080--Hb_003427_080 Hb_011574_010--Hb_003038_150 Hb_011574_010--Hb_000703_300 Hb_005656_150 Hb_005656_150 Hb_011574_010--Hb_005656_150 Hb_011574_010--Hb_023675_030 Hb_001488_260 Hb_001488_260 Hb_011574_010--Hb_001488_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0175724 0 0.013851 0.0133341 0.051697 0.110358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0379302 0.261454

CAGE analysis