Hb_023675_030

Information

Type -
Description -
Location Contig23675: 26425-27825
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023675_030 0.0 - - -
2 Hb_003038_150 0.210152682 - - -
3 Hb_001461_020 0.2108240935 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
4 Hb_002249_210 0.2130485946 - - -
5 Hb_007313_060 0.2294718515 - - PREDICTED: paramyosin [Jatropha curcas]
6 Hb_000703_300 0.2455788424 - - -
7 Hb_032733_010 0.2486165545 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
8 Hb_003327_020 0.2565301807 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
9 Hb_008123_010 0.2575247771 - - -
10 Hb_011574_010 0.2578466346 - - -
11 Hb_001417_020 0.2583731518 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
12 Hb_004785_070 0.2614554954 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
13 Hb_005656_150 0.2620766572 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
14 Hb_002276_070 0.2633581882 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
15 Hb_004459_070 0.2650424217 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
16 Hb_012165_020 0.2655275969 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
17 Hb_001488_260 0.2658476768 - - Alpha-2-macroglobulin [Gossypium arboreum]
18 Hb_002495_060 0.2702386889 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_012184_030 0.2703543844 - - -
20 Hb_007810_070 0.2705933303 - - hypothetical protein VITISV_027174 [Vitis vinifera]

Gene co-expression network

sample Hb_023675_030 Hb_023675_030 Hb_003038_150 Hb_003038_150 Hb_023675_030--Hb_003038_150 Hb_001461_020 Hb_001461_020 Hb_023675_030--Hb_001461_020 Hb_002249_210 Hb_002249_210 Hb_023675_030--Hb_002249_210 Hb_007313_060 Hb_007313_060 Hb_023675_030--Hb_007313_060 Hb_000703_300 Hb_000703_300 Hb_023675_030--Hb_000703_300 Hb_032733_010 Hb_032733_010 Hb_023675_030--Hb_032733_010 Hb_003038_150--Hb_000703_300 Hb_011574_010 Hb_011574_010 Hb_003038_150--Hb_011574_010 Hb_003038_150--Hb_002249_210 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_008123_010 Hb_008123_010 Hb_003038_150--Hb_008123_010 Hb_000003_260 Hb_000003_260 Hb_001461_020--Hb_000003_260 Hb_085083_020 Hb_085083_020 Hb_001461_020--Hb_085083_020 Hb_001461_020--Hb_000236_450 Hb_001417_020 Hb_001417_020 Hb_001461_020--Hb_001417_020 Hb_000964_070 Hb_000964_070 Hb_001461_020--Hb_000964_070 Hb_002249_210--Hb_011574_010 Hb_002249_210--Hb_000703_300 Hb_000330_080 Hb_000330_080 Hb_002249_210--Hb_000330_080 Hb_002249_210--Hb_008123_010 Hb_000395_090 Hb_000395_090 Hb_007313_060--Hb_000395_090 Hb_008092_080 Hb_008092_080 Hb_007313_060--Hb_008092_080 Hb_003427_080 Hb_003427_080 Hb_007313_060--Hb_003427_080 Hb_000053_120 Hb_000053_120 Hb_007313_060--Hb_000053_120 Hb_024714_080 Hb_024714_080 Hb_007313_060--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_007313_060--Hb_003077_130 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_001488_260 Hb_001488_260 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000703_300--Hb_000330_080 Hb_003032_090 Hb_003032_090 Hb_032733_010--Hb_003032_090 Hb_006816_040 Hb_006816_040 Hb_032733_010--Hb_006816_040 Hb_002835_090 Hb_002835_090 Hb_032733_010--Hb_002835_090 Hb_004611_040 Hb_004611_040 Hb_032733_010--Hb_004611_040 Hb_000038_020 Hb_000038_020 Hb_032733_010--Hb_000038_020 Hb_001155_020 Hb_001155_020 Hb_032733_010--Hb_001155_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1518 0.5136 0.284553 0.25093 1.37342 0.185397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0710201 0 0.301932 0.203695 4.80102

CAGE analysis