Hb_003038_150

Information

Type -
Description -
Location Contig3038: 81606-83019
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_150 0.0 - - -
2 Hb_000703_300 0.191349551 - - -
3 Hb_011574_010 0.1996031589 - - -
4 Hb_023675_030 0.210152682 - - -
5 Hb_002249_210 0.2138577758 - - -
6 Hb_000236_450 0.2209885238 - - coated vesicle membrane protein, putative [Ricinus communis]
7 Hb_008123_010 0.2216730079 - - -
8 Hb_002276_070 0.229778023 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
9 Hb_003626_080 0.2409640713 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001488_260 0.24471715 - - Alpha-2-macroglobulin [Gossypium arboreum]
11 Hb_090530_010 0.2479565506 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_012165_020 0.2591649843 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
13 Hb_000330_080 0.2618821102 - - auxilin, putative [Ricinus communis]
14 Hb_008092_080 0.2621648064 - - elongation factor ts, putative [Ricinus communis]
15 Hb_052548_010 0.2648870186 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
16 Hb_004785_070 0.2677484434 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
17 Hb_001366_160 0.2715621816 - - -
18 Hb_003077_130 0.2728143529 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
19 Hb_010488_010 0.2729512038 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
20 Hb_085083_020 0.2773066391 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_150 Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_003038_150--Hb_000703_300 Hb_011574_010 Hb_011574_010 Hb_003038_150--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_003038_150--Hb_023675_030 Hb_002249_210 Hb_002249_210 Hb_003038_150--Hb_002249_210 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_008123_010 Hb_008123_010 Hb_003038_150--Hb_008123_010 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_001488_260 Hb_001488_260 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_000703_300--Hb_000330_080 Hb_011574_010--Hb_002249_210 Hb_011574_010--Hb_000703_300 Hb_005656_150 Hb_005656_150 Hb_011574_010--Hb_005656_150 Hb_011574_010--Hb_023675_030 Hb_011574_010--Hb_001488_260 Hb_001461_020 Hb_001461_020 Hb_023675_030--Hb_001461_020 Hb_023675_030--Hb_002249_210 Hb_007313_060 Hb_007313_060 Hb_023675_030--Hb_007313_060 Hb_023675_030--Hb_000703_300 Hb_032733_010 Hb_032733_010 Hb_023675_030--Hb_032733_010 Hb_002249_210--Hb_000703_300 Hb_002249_210--Hb_000330_080 Hb_002249_210--Hb_008123_010 Hb_011616_020 Hb_011616_020 Hb_000236_450--Hb_011616_020 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_003805_070 Hb_003805_070 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070 Hb_090530_010 Hb_090530_010 Hb_008123_010--Hb_090530_010 Hb_008123_010--Hb_011616_020 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37232 0.918214 0.767475 0.890355 6.00002 0.981639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560661 0 0.332035 2.66885 13.7801

CAGE analysis