Hb_001488_260

Information

Type -
Description -
Location Contig1488: 170660-177137
Sequence    

Annotation

kegg
ID zma:100501502
description uncharacterized LOC100501502
nr
ID KHG28094.1
description Alpha-2-macroglobulin [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0A9ISI3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12321: 170825-174750 , PASA_asmbl_12322: 170825-174750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_260 0.0 - - Alpha-2-macroglobulin [Gossypium arboreum]
2 Hb_000703_300 0.2136294897 - - -
3 Hb_007313_060 0.2157783431 - - PREDICTED: paramyosin [Jatropha curcas]
4 Hb_002276_070 0.2265131369 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
5 Hb_000463_030 0.229222679 - - -
6 Hb_004459_070 0.2400430518 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
7 Hb_003038_150 0.24471715 - - -
8 Hb_008123_010 0.2454693482 - - -
9 Hb_015026_080 0.2525906286 - - -
10 Hb_031658_040 0.2531007969 - - -
11 Hb_001366_160 0.2574165617 - - -
12 Hb_004785_070 0.2606844009 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
13 Hb_024714_080 0.2624670312 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
14 Hb_000395_090 0.2629149615 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
15 Hb_002249_210 0.2635249643 - - -
16 Hb_023675_030 0.2658476768 - - -
17 Hb_008092_080 0.2673393922 - - elongation factor ts, putative [Ricinus communis]
18 Hb_011574_010 0.2677516721 - - -
19 Hb_003077_130 0.268159332 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
20 Hb_000236_450 0.2693397203 - - coated vesicle membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001488_260 Hb_001488_260 Hb_000703_300 Hb_000703_300 Hb_001488_260--Hb_000703_300 Hb_007313_060 Hb_007313_060 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_000463_030 Hb_000463_030 Hb_001488_260--Hb_000463_030 Hb_004459_070 Hb_004459_070 Hb_001488_260--Hb_004459_070 Hb_003038_150 Hb_003038_150 Hb_001488_260--Hb_003038_150 Hb_000703_300--Hb_003038_150 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_000703_300--Hb_000330_080 Hb_000395_090 Hb_000395_090 Hb_007313_060--Hb_000395_090 Hb_008092_080 Hb_008092_080 Hb_007313_060--Hb_008092_080 Hb_003427_080 Hb_003427_080 Hb_007313_060--Hb_003427_080 Hb_000053_120 Hb_000053_120 Hb_007313_060--Hb_000053_120 Hb_024714_080 Hb_024714_080 Hb_007313_060--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_007313_060--Hb_003077_130 Hb_001437_120 Hb_001437_120 Hb_002276_070--Hb_001437_120 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_028707_110 Hb_028707_110 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010 Hb_105581_010 Hb_105581_010 Hb_000463_030--Hb_105581_010 Hb_001417_020 Hb_001417_020 Hb_000463_030--Hb_001417_020 Hb_008123_010 Hb_008123_010 Hb_000463_030--Hb_008123_010 Hb_154141_010 Hb_154141_010 Hb_000463_030--Hb_154141_010 Hb_004687_010 Hb_004687_010 Hb_000463_030--Hb_004687_010 Hb_004459_070--Hb_007313_060 Hb_007810_070 Hb_007810_070 Hb_004459_070--Hb_007810_070 Hb_005656_150 Hb_005656_150 Hb_004459_070--Hb_005656_150 Hb_023675_030 Hb_023675_030 Hb_004459_070--Hb_023675_030 Hb_004459_070--Hb_000395_090 Hb_011574_010 Hb_011574_010 Hb_003038_150--Hb_011574_010 Hb_003038_150--Hb_023675_030 Hb_002249_210 Hb_002249_210 Hb_003038_150--Hb_002249_210 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_003038_150--Hb_008123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0523679 0.0217492 0.0264226 0 0.0698459 0.0327525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0199659 0.0157104 0 0.0312205 0.26643

CAGE analysis