Hb_000395_090

Information

Type -
Description -
Location Contig395: 119182-120397
Sequence    

Annotation

kegg
ID rcu:RCOM_1313120
description hypothetical protein
nr
ID XP_012086592.1
description PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20351 PE=4 SV=1
Gene Ontology
ID GO:0009965
description PREDICTED: uncharacterized protein LOC105645572

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39506: 118987-119570 , PASA_asmbl_39508: 119800-120323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_090 0.0 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
2 Hb_000053_120 0.1431950783 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
3 Hb_072212_010 0.1480193485 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
4 Hb_003427_080 0.1520807417 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
5 Hb_005618_150 0.1541562068 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
6 Hb_001307_040 0.1614924287 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
7 Hb_007313_060 0.1619174802 - - PREDICTED: paramyosin [Jatropha curcas]
8 Hb_008092_050 0.1627769938 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
9 Hb_008092_060 0.163795389 - - -
10 Hb_003077_130 0.1659362357 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
11 Hb_004611_040 0.1738024195 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002740_190 0.1738173303 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
13 Hb_006062_030 0.1782132967 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
14 Hb_002276_070 0.1840945778 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
15 Hb_028707_110 0.1849826238 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
16 Hb_143629_060 0.1850292628 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
17 Hb_024714_080 0.1860357862 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_001437_120 0.1886727751 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
19 Hb_001155_020 0.1892934752 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
20 Hb_001408_030 0.1899047435 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000395_090 Hb_000395_090 Hb_000053_120 Hb_000053_120 Hb_000395_090--Hb_000053_120 Hb_072212_010 Hb_072212_010 Hb_000395_090--Hb_072212_010 Hb_003427_080 Hb_003427_080 Hb_000395_090--Hb_003427_080 Hb_005618_150 Hb_005618_150 Hb_000395_090--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_000395_090--Hb_001307_040 Hb_007313_060 Hb_007313_060 Hb_000395_090--Hb_007313_060 Hb_000053_120--Hb_003427_080 Hb_006062_030 Hb_006062_030 Hb_000053_120--Hb_006062_030 Hb_024714_080 Hb_024714_080 Hb_000053_120--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_000053_120--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_000053_120--Hb_000069_490 Hb_000402_170 Hb_000402_170 Hb_000053_120--Hb_000402_170 Hb_001155_020 Hb_001155_020 Hb_072212_010--Hb_001155_020 Hb_017043_030 Hb_017043_030 Hb_072212_010--Hb_017043_030 Hb_072212_010--Hb_000053_120 Hb_004611_040 Hb_004611_040 Hb_072212_010--Hb_004611_040 Hb_001338_160 Hb_001338_160 Hb_072212_010--Hb_001338_160 Hb_003427_080--Hb_000402_170 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_001907_070 Hb_001907_070 Hb_005618_150--Hb_001907_070 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_001723_030 Hb_001723_030 Hb_005618_150--Hb_001723_030 Hb_005618_150--Hb_006062_030 Hb_004871_010 Hb_004871_010 Hb_005618_150--Hb_004871_010 Hb_001307_040--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001307_040--Hb_008092_060 Hb_005271_160 Hb_005271_160 Hb_001307_040--Hb_005271_160 Hb_001408_030 Hb_001408_030 Hb_001307_040--Hb_001408_030 Hb_003900_030 Hb_003900_030 Hb_001307_040--Hb_003900_030 Hb_008092_080 Hb_008092_080 Hb_007313_060--Hb_008092_080 Hb_007313_060--Hb_003427_080 Hb_007313_060--Hb_000053_120 Hb_007313_060--Hb_024714_080 Hb_007313_060--Hb_003077_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42084 2.08601 5.18621 2.07427 2.46205 4.07799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.913308 0.877938 0.146896 0.65799 18.5306

CAGE analysis